Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_C23
(915 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.74
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 31 0.98
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 31 1.3
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 29 4.0
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 5.2
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 6.9
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 29 6.9
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6) 28 9.2
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 28 9.2
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 31.9 bits (69), Expect = 0.74
Identities = 22/78 (28%), Positives = 24/78 (30%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G GG G + G + G AG
Sbjct: 1770 GGGMAGGGGGMGGGGMAAGGGEFGGGEGMGGGGMAGGGGGMGGGGGGMGGGGEGMG-AAG 1828
Query: 683 GRXXXGGXXXGGXXXGXG 630
G GG G G G
Sbjct: 1829 GGMGAGGEGGGAGGGGGG 1846
Score = 30.7 bits (66), Expect = 1.7
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPA-XFKFGGWAQTSSXGXLMXXGXXINPSXXG-GNPR 690
GGG G GG AGG G A +FGG + G + G + G G
Sbjct: 1763 GGGGMGGGGGMAGGGGGMGGGGMAAGGGEFGG-GEGMGGGGMAGGGGGMGGGGGGMGGGG 1821
Query: 689 AGGRXXXGGXXXGGXXXGXG 630
G GG GG G G
Sbjct: 1822 EGMGAAGGGMGAGGEGGGAG 1841
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 31.5 bits (68), Expect = 0.98
Identities = 21/79 (26%), Positives = 26/79 (32%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG + G G GG + + GG+ G G GG G
Sbjct: 145 GGGYRGGGGYRGGGGGYRGRGRGGGGYGGGGYGGGGYGGGGHGGGGYGGGGYGGGGGGYG 204
Query: 683 GRXXXGGXXXGGXXXGXGK 627
G GG GG G G+
Sbjct: 205 GSGYGGGGGYGGGGYGGGR 223
Score = 28.7 bits (61), Expect = 6.9
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTS-SXGXLMXXGXXINPSXXGGNPRA 687
GGG G GG G G + GG+ G G GG+
Sbjct: 150 GGGGYRGGGGGYRGRGRGGGGYGGGGYGGGGYGGGGHGGGGYGGGGYGGGGGGYGGSGYG 209
Query: 686 GGRXXXGGXXXGGXXXGXG 630
GG GG GG G G
Sbjct: 210 GGGGYGGGGYGGGRSGGGG 228
>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 190 SSADRAESQHQREDEAQNTYEIHFTEIL*CRRIQNSN 80
+ D E + + E+E +++YE +TEIL RR+ + N
Sbjct: 341 NQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFN 377
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 190 SSADRAESQHQREDEAQNTYEIHFTEIL*CRRIQNSN 80
+ D E + + E+E +++YE +TEIL RR+ + N
Sbjct: 985 NQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFN 1021
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.3 bits (65), Expect = 2.3
Identities = 24/80 (30%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G A GG T G G G G
Sbjct: 243 GGGATGGGGGATGGGGGATGGGGGA--TGGGGGATGGGGGATGGGGGATGGGGGATGGGG 300
Query: 683 GRXXXGG--XXXGGXXXGXG 630
G GG GG G G
Sbjct: 301 GATGGGGGATGVGGGATGGG 320
Score = 29.1 bits (62), Expect = 5.2
Identities = 24/78 (30%), Positives = 28/78 (35%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G A GG ++ G + G + GG G
Sbjct: 292 GGGATGGGGGATGGGGGATGVGGGATGGGGG----ATGGGVGATGGGGGATGGGGGVTGG 347
Query: 683 GRXXXGGXXXGGXXXGXG 630
G GG GG G G
Sbjct: 348 G----GGATGGGGGPGSG 361
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 625 YFPXPXXXPPXXXPPXXXRPPARGXPP 705
Y P P PP PP PP R PP
Sbjct: 304 YMPHPRMRPPTRIPPPGMGPPPRIPPP 330
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 29.5 bits (63), Expect = 4.0
Identities = 23/81 (28%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGX---LMXXGXXINPSXXGGNP 693
GGG G GG GG G GG G G + GG
Sbjct: 793 GGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGGDGGGYGDGGGFGDGGGYADGDGGGGGG 852
Query: 692 RAGGRXXXGGXXXGGXXXGXG 630
GG GG GG G G
Sbjct: 853 GGGGGGGGGGGGGGGGGGGGG 873
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 631 PXPXXXPPXXXPPXXXRPPARGXPPL-XXGLIXLPXXIXNPLDEVWAQPPNL 783
P P PP PP PP G PP+ G+ +P P PPN+
Sbjct: 242 PPPHSMPPPGMPPPGMMPPP-GFPPMGMPGMGGMPPPGMPPPMPPGGMPPNM 292
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.1 bits (62), Expect = 5.2
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Frame = -2
Query: 863 GGGPKXGX-GGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRA 687
GGG + G GG GG + G + GG G G S GG
Sbjct: 143 GGGYRGGYRGGYRGGY--RGGRDRGGGYGGGGEGGYGMGGGDYSGGCGYGSSYGGGGDYG 200
Query: 686 GGRXXXGGXXXGGXXXGXGK*Y 621
GG GG G G G Y
Sbjct: 201 GGPGYGGGQGYGSYSGGGGGNY 222
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 767 PNPQT*XXRGXXXPXFXXXPRPPPLXXFLGHPXQ 868
P P +G P F PRPPP G P Q
Sbjct: 230 PGPPALLQQGPPGPPFHGEPRPPPHHDMRGPPDQ 263
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 28.7 bits (61), Expect = 6.9
Identities = 22/78 (28%), Positives = 22/78 (28%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G A GG T G G G G
Sbjct: 58 GGGATGGGGGATGGGGGATGGHGGA--TGGGGGATGDGGGATGGGGGATGGGGGATGGHG 115
Query: 683 GRXXXGGXXXGGXXXGXG 630
G G GG G
Sbjct: 116 GATGGGVGATGGHGGATG 133
Score = 28.7 bits (61), Expect = 6.9
Identities = 21/72 (29%), Positives = 21/72 (29%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G A GG T G G G
Sbjct: 100 GGGATGGGGGATGGHGGATGGGVGATGGHGG--ATGGHGGATGGHGGATGGGGGATGGGG 157
Query: 683 GRXXXGGXXXGG 648
G GG GG
Sbjct: 158 GATGGGGGATGG 169
>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
Length = 1953
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 237 RPTFSIFLKSFHLGSGAALTAPRASTN 157
RP+F + LKS G+GAA P TN
Sbjct: 1831 RPSFKLVLKSLEEGNGAARVRPCRITN 1857
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 28.3 bits (60), Expect = 9.2
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = -1
Query: 237 RPTFSIFLKSF-HLGSGA---ALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYR 70
RP +++ ++S + SG T T K+ LK++ FI P+F + P+ Y+
Sbjct: 2669 RPVYTLIIESLKYTDSGTYKCIATNEGGVTTIKSDLKVKEPFIAPEF-EGKDITAPMVYK 2727
Query: 69 STRTL*P--XLKS*EFPIVSW 13
+ + +KS PI++W
Sbjct: 2728 DGQDIKVSFKIKSRPKPIIAW 2748
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,431,414
Number of Sequences: 59808
Number of extensions: 364022
Number of successful extensions: 1700
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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