Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_C23
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 36 0.040
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 36 0.053
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 36 0.053
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 33 0.38
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 32 0.66
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 30 2.0
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 30 2.0
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 30 2.0
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z68750-1|CAA92963.1| 284|Caenorhabditis elegans Hypothetical pr... 29 4.6
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 28 8.1
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 8.1
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 8.1
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 8.1
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 28 8.1
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 35.9 bits (79), Expect = 0.040
Identities = 24/78 (30%), Positives = 24/78 (30%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGGP G GG G G G W G G GG R G
Sbjct: 50 GGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGN---GGGGRGGGGGGGGGRGG 106
Query: 683 GRXXXGGXXXGGXXXGXG 630
G GG GG G G
Sbjct: 107 GGGGRGGGGGGGGGRGGG 124
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 35.5 bits (78), Expect = 0.053
Identities = 24/78 (30%), Positives = 25/78 (32%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G P GG G G P+ GG G
Sbjct: 27 GGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGG 86
Query: 683 GRXXXGGXXXGGXXXGXG 630
G GG G G G
Sbjct: 87 GGGCGGGGGGCGGGGGCG 104
Score = 32.3 bits (70), Expect = 0.50
Identities = 24/76 (31%), Positives = 25/76 (32%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG A G GG+A S G G S GG G
Sbjct: 213 GGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSG----GGYSSGGSSGGGYSTGG 268
Query: 683 GRXXXGGXXXGGXXXG 636
G GG GG G
Sbjct: 269 GGGYAGGGGGGGGSSG 284
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/78 (32%), Positives = 26/78 (33%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G A GG S G G + PS GG G
Sbjct: 160 GGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSG---GGGYAVAPSGGGG---CG 213
Query: 683 GRXXXGGXXXGGXXXGXG 630
G GG G G
Sbjct: 214 GGGSSGGGGYASAPSGGG 231
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 35.5 bits (78), Expect = 0.053
Identities = 24/78 (30%), Positives = 25/78 (32%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G P GG G G P+ GG G
Sbjct: 27 GGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGG 86
Query: 683 GRXXXGGXXXGGXXXGXG 630
G GG G G G
Sbjct: 87 GGGCGGGGGGCGGGGGCG 104
Score = 32.3 bits (70), Expect = 0.50
Identities = 24/76 (31%), Positives = 25/76 (32%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG A G GG+A S G G S GG G
Sbjct: 213 GGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSG----GGYSSGGSSGGGYSTGG 268
Query: 683 GRXXXGGXXXGGXXXG 636
G GG GG G
Sbjct: 269 GGGYAGGGGGGGGSSG 284
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/78 (32%), Positives = 26/78 (33%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G A GG S G G + PS GG G
Sbjct: 160 GGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSG---GGGYAVAPSGGGG---CG 213
Query: 683 GRXXXGGXXXGGXXXGXG 630
G GG G G
Sbjct: 214 GGGSSGGGGYASAPSGGG 231
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 32.7 bits (71), Expect = 0.38
Identities = 23/71 (32%), Positives = 26/71 (36%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G GG ++ G L+ G I GGN G
Sbjct: 52 GGGGGGGGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLV--GSLIGGGGGGGNYGGG 109
Query: 683 GRXXXGGXXXG 651
G GG G
Sbjct: 110 GGNQGGGGGGG 120
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 31.9 bits (69), Expect = 0.66
Identities = 22/76 (28%), Positives = 24/76 (31%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G G G G G W ++ G G N GGN G
Sbjct: 73 GGGGNWGGNGGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGN-NGG 131
Query: 683 GRXXXGGXXXGGXXXG 636
G GG GG G
Sbjct: 132 GGGGRGGGGRGGDGRG 147
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +1
Query: 631 PXPXXXPPXXXPPXXXRPPARGXPPLXXGLIXLPXXIXNPLDEVWAQP 774
P PP PP PP G PP GL P + P+ + P
Sbjct: 84 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPP 131
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +1
Query: 631 PXPXXXPPXXXPPXXXRPPARGXPPLXXGLIXLPXXIXNPLDEVWAQP 774
P PP PP PP G PP GL P + P+ + P
Sbjct: 107 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPP 154
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +1
Query: 631 PXPXXXPPXXXPPXXXRPPARGXPPLXXGLIXLPXXIXNPLDEVWAQP 774
P PP PP PP G PP GL P + P+ + P
Sbjct: 357 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPP 404
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/78 (29%), Positives = 28/78 (35%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAG 684
GGG G GG GG G + GG + ++S G G + GGN G
Sbjct: 787 GGGGGGGNGGSGGGGGGGGGGSGGSG---GGGSNSNSGG---GGGNGGGGNGGGGNGNGG 840
Query: 683 GRXXXGGXXXGGXXXGXG 630
G G G G G
Sbjct: 841 GAGDGNGGAGAGNGNGAG 858
>Z68750-1|CAA92963.1| 284|Caenorhabditis elegans Hypothetical
protein K01A6.4 protein.
Length = 284
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/77 (27%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Frame = -2
Query: 857 GPKXGXGGXAGGXXXKXGXXX-PAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAGG 681
G + G GG GG + G + FGG+ Q G G GN G
Sbjct: 48 GSQQGFGGMQGGFGGQSGFGGGSSQGGFGGFGQQGGFGGNSQGGFGGQQGGFSGNSPGGF 107
Query: 680 RXXXGGXXXGGXXXGXG 630
GG G G G
Sbjct: 108 EGQQGGFGGFGQQVGFG 124
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/79 (29%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Frame = -2
Query: 863 GGGPKXGXGGXAGG-XXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRA 687
GGG G GG GG G +GG G G N + GG +
Sbjct: 52 GGGGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGGNQGGG----GGGGFNFNDIGGLINS 107
Query: 686 GGRXXXGGXXXGGXXXGXG 630
G GG GG G G
Sbjct: 108 MGGGGGGGQRQGGGGGGFG 126
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKF-------GGWAQTSSXGXLMXXGXXINPSXX 705
GGG + G GG GG + G + GGW Q G G
Sbjct: 245 GGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGG 304
Query: 704 GGNPRAGGRXXXGGXXXGG 648
G P+ GG GG GG
Sbjct: 305 WGGPQQGG----GGGGWGG 319
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKF-------GGWAQTSSXGXLMXXGXXINPSXX 705
GGG + G GG GG + G + GGW Q G G
Sbjct: 207 GGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGG 266
Query: 704 GGNPRAGGRXXXGGXXXGG 648
G P+ GG GG GG
Sbjct: 267 WGGPQQGG----GGGGWGG 281
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Frame = -2
Query: 863 GGGPKXGXGGXAGGXXXKXGXXXPAXFKF-------GGWAQTSSXGXLMXXGXXINPSXX 705
GGG + G GG GG + G + GGW Q G G
Sbjct: 245 GGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGG 304
Query: 704 GGNPRAGGRXXXGGXXXGG 648
G P+ GG GG GG
Sbjct: 305 WGGPQQGG----GGGGWGG 319
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/72 (27%), Positives = 22/72 (30%)
Frame = -2
Query: 845 GXGGXAGGXXXKXGXXXPAXFKFGGWAQTSSXGXLMXXGXXINPSXXGGNPRAGGRXXXG 666
G GG G G + GG+ G M G GG GG G
Sbjct: 75 GRGGYGGSGGGAFGGFN-GGYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYG 133
Query: 665 GXXXGGXXXGXG 630
G GG G G
Sbjct: 134 GGGYGGMGGGPG 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,918
Number of Sequences: 27780
Number of extensions: 302634
Number of successful extensions: 1185
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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