Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C23
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.73 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   5.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 771 TPKLKXXGXXXXPLXGXPPGXPPSA 845
           +P+    G    P  G PPG PP A
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGA 54



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 807 PLXGXPPGXPPS 842
           P  G PPG PPS
Sbjct: 46  PPPGGPPGAPPS 57


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 214 EEFPPGLRSSADRAESQHQREDEAQNT 134
           +EFP    S  +R  S HQR   + NT
Sbjct: 102 KEFPNSSSSDDERPNSIHQRASFSLNT 128


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 375 IHN-YLQYCFKLNASLVLYHEVYFPKDF 295
           +HN +   CF  NA  V +HE+  P  +
Sbjct: 84  LHNIWRPDCFFKNAKKVTFHEMSIPNHY 111


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 636 PPXPXPXXPPP 668
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,357
Number of Sequences: 438
Number of extensions: 4728
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)