Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C22
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   3.6  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    27   3.6  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   3.6  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   4.8  

>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 537 QFHRNHIVSANSTPELMKPVRAXCDSSRRLYFSVSSVSASPPTD 406
           QF+  H ++ NSTP L +   A   +     +S++ +SA+   D
Sbjct: 487 QFYLEHAINHNSTPHLHRAKSATSLADEASTYSITPMSATALMD 530


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 697 RELEXGPYPXTLXCSXXVTGF--GPTLILXITTNVAXHHLTXLTML 828
           R+L+ GP    L CS  V GF  GP +I  ++  +    +  +T++
Sbjct: 130 RDLKVGPEVANLSCSLMVVGFGIGPLVISPLSEMIGRRIVYLVTLM 175


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 273 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 157
           S+   GC +TE+    T+ C  E     SCC S K  CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 88  CSGRD*SPPNVYGESNLKEFPIVSW 14
           CS  D + P  +   NL++FPI  W
Sbjct: 316 CSSSDDAKPITFVTKNLRKFPIPEW 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,737
Number of Sequences: 5004
Number of extensions: 54535
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)