Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C22
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              52   6e-07
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              36   0.059
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.078
SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.72 

>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
 Frame = +3

Query: 171 CYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNEX---LGHRXN 341
           CYY + S  R       P D+DP L  CTH+L+ +A +   T+KL    E    L  R N
Sbjct: 25  CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEENDHELYQRIN 82

Query: 342 TRKLXCDHQLESQVX---WVSXXXXXXVATLIPKKQKNITFCWNRSXPVLVSLIPECCWL 512
             K   + +L++Q+    W         + ++  K+K   F        + S I     L
Sbjct: 83  ALK-KINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIF--------IKSAIET---L 130

Query: 513 KQYGFDGIXLAWQFPRVKPXKXRSXWG 593
           + +GFDG+ L W++P ++    +S  G
Sbjct: 131 RTHGFDGLDLDWEYPGMRGGSPKSDKG 157



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
 Frame = +3

Query: 147 AVTHSKVLCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNEX- 323
           AV+    +CYY + S  R       P D+DP L  CTH+++ ++ +   T+ +    +  
Sbjct: 402 AVSEYVRVCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKND 459

Query: 324 --LGHRXNTRKLXCDHQLESQVX---WVSXXXXXXVATLIPKKQKNITFCWNRSXPVLVS 488
             L  R N  K   + +L++Q+    W         + ++  K+K   F        + S
Sbjct: 460 FDLYKRINALK-KINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIF--------IKS 510

Query: 489 LIPECCWLKQYGFDGIXLAWQFPRVKPXKXRSXWG 593
            I     L+  GFDG+ L W++P ++    +S  G
Sbjct: 511 AIET---LRTNGFDGLDLDWEYPGMRGGSPKSDKG 542


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +3

Query: 168 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKL 305
           +CY+ + +  R    + LP D+DP L  CTH++Y +A I P T K+
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKI 444


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 35.5 bits (78), Expect = 0.059
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
 Frame = +3

Query: 168 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGI-QPDTYKLVSLN-EXLGHRXN 341
           +CY+ + S  R+ +A+  P D+ PA   CTHL+Y +A I Q +   +   N + L  R N
Sbjct: 22  VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWNDDKLYPRFN 79

Query: 342 TRKLXCDHQLESQVXWVSXXXXXXVATLIPKKQKNITFCWNRSXPVLVSLIPECCWLKQY 521
             K   + +L++ +  V         +   +  K        +  V +  +     L+ +
Sbjct: 80  ALKQK-NPELKTLLA-VGGWNHENANSPFSRMVKTAA-----TRKVFIDSVIRI--LRTW 130

Query: 522 GFDGIXLAWQFPRVK 566
           GFDG+ L W++P  +
Sbjct: 131 GFDGLDLDWEYPATR 145


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 35.1 bits (77), Expect = 0.078
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +3

Query: 168 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKL 305
           +CYY + +  R   A+  P ++DP+L  CTH++Y +A +  D  KL
Sbjct: 25  VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKL 67


>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 444 FSVSSVSASPPTDNNTVRPRXLGFQAGDRTXVFVC 340
           FS   ++ +P TD  T+ PR   F+A D   VF+C
Sbjct: 323 FSAIDLAEAPSTDGFTIHPRSRLFRAWDSISVFLC 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,302,876
Number of Sequences: 59808
Number of extensions: 449297
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)