BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP03_F_C22 (896 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical pr... 30 2.0 U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon ge... 29 6.0 AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. 29 6.0 Z70035-9|CAA93870.2| 450|Caenorhabditis elegans Hypothetical pr... 28 7.9 >Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical protein T13H5.3 protein. Length = 626 Score = 30.3 bits (65), Expect = 2.0 Identities = 8/16 (50%), Positives = 14/16 (87%) Frame = +3 Query: 510 LKQYGFDGIXLAWQFP 557 +K+YGFDG+ + W++P Sbjct: 130 IKEYGFDGVDIDWEYP 145 >U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon gene protein 1 protein. Length = 892 Score = 28.7 bits (61), Expect = 6.0 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -3 Query: 507 NSTPELMKPVRAXCDSSRRLYFSVSSVSASPPTDNNTVRP 388 ++ EL P + CD RL+ ++SS+ + TD+N +RP Sbjct: 503 SAVDELPPPSTSGCDG--RLFDALSSIIKAVGTDDNRIRP 540 >AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. Length = 885 Score = 28.7 bits (61), Expect = 6.0 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -3 Query: 507 NSTPELMKPVRAXCDSSRRLYFSVSSVSASPPTDNNTVRP 388 ++ EL P + CD RL+ ++SS+ + TD+N +RP Sbjct: 496 SAVDELPPPSTSGCDG--RLFDALSSIIKAVGTDDNRIRP 533 >Z70035-9|CAA93870.2| 450|Caenorhabditis elegans Hypothetical protein R09D1.10 protein. Length = 450 Score = 28.3 bits (60), Expect = 7.9 Identities = 9/20 (45%), Positives = 16/20 (80%) Frame = +3 Query: 507 WLKQYGFDGIXLAWQFPRVK 566 +LK+Y DG+ L W++PR++ Sbjct: 179 FLKKYDIDGVDLFWKWPRLE 198 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,511,196 Number of Sequences: 27780 Number of extensions: 326125 Number of successful extensions: 646 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 630 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 646 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2276333906 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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