Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C22
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si...    30   2.4  
At2g33990.1 68415.m04162 calmodulin-binding family protein simil...    28   9.7  

>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 261

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 513 KQYGFDGIXLAWQFPR 560
           + YGFDG+ L W++PR
Sbjct: 20  RSYGFDGLDLDWEYPR 35


>At2g33990.1 68415.m04162 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 249

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 501 TPELMKPVRAXCDSSRRLYFSVSSVSASPPTDN--NTVRPRXLGF 373
           TP+  K  +   +S  +   S+SSV A  P     NTV+PR L F
Sbjct: 202 TPKKPKSSKTDSNSPAKRTVSLSSVPAKTPFPGARNTVKPRRLSF 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,738,687
Number of Sequences: 28952
Number of extensions: 309886
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)