Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C20
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         33   0.40 
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409...    31   1.2  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 20/68 (29%), Positives = 21/68 (30%)
 Frame = +3

Query: 687  PPPPXKAXXXXXXXXXXXXXX*XPXASGPSGLXANPVXXXPQXAGXSXXXPPTSXDHPPG 866
            PPPP K+                P    P  L   PV   P  A      PP     PP 
Sbjct: 1161 PPPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPVKSPPPPA 1220

Query: 867  XXPLXPPP 890
               L PPP
Sbjct: 1221 PVILPPPP 1228



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/67 (28%), Positives = 21/67 (31%)
 Frame = +3

Query: 687  PPPPXKAXXXXXXXXXXXXXX*XPXASGPSGLXANPVXXXPQXAGXSXXXPPTSXDHPPG 866
            PPPP K+                P  + P  L    V   P  A  S   PP     PP 
Sbjct: 1225 PPPPVKSPPPPAPVISPPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPPPPVKSLPPPA 1284

Query: 867  XXPLXPP 887
               L PP
Sbjct: 1285 PVSLPPP 1291



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/68 (26%), Positives = 19/68 (27%)
 Frame = +3

Query: 687  PPPPXKAXXXXXXXXXXXXXX*XPXASGPSGLXANPVXXXPQXAGXSXXXPPTSXDHPPG 866
            PPP  K                 P    P  L   P+   P  A      PP     PP 
Sbjct: 1129 PPPTVKPLPPPVPVSSPPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPA 1188

Query: 867  XXPLXPPP 890
               L PPP
Sbjct: 1189 PVILPPPP 1196


>12_02_0370 +
           18139557-18140469,18140561-18140704,18140804-18140956,
           18141032-18141147,18141231-18141398,18142110-18142334,
           18142458-18142577
          Length = 612

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +1

Query: 667 PAINXXXPPPXXRPFAXXGXPSRXPPXXDXXXXXXXXXXXXTRXPXPPKXR 819
           P +    PPP  +P      PS+ PP  +            T+ P PP+ R
Sbjct: 64  PVVISEPPPPQPQPEPQPAAPSQPPPPQEQPSPPPPASSNTTQQPPPPQQR 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,190
Number of Sequences: 37544
Number of extensions: 288128
Number of successful extensions: 633
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)