Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C20
         (893 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         31   1.3  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  

>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/68 (30%), Positives = 22/68 (32%)
 Frame = +3

Query: 687 PPPPXKAXXXXXXXXXXXXXX*XPXASGPSGLXANPVXXXPQXAGXSXXXPPTSXDHPPG 866
           PPPP                   P   G +GL   P    P  AG     PP     PPG
Sbjct: 694 PPPPPPPPPPLLSGTLPMPPPPPPPPPGCAGLPPPPPSPQPGCAGLPPPPPPP----PPG 749

Query: 867 XXPLXPPP 890
              L PPP
Sbjct: 750 CAGLPPPP 757


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
 Frame = +3

Query: 765 SGPSGLXANPVXXXP----QXAGXSXXXPPTSXDHPPGXXPLXPPP 890
           SGP  L + PV   P      AG     PP     P G  P  PPP
Sbjct: 358 SGPKPLMSTPVQRPPGMRPPGAGNGPGGPPPPWSKPGGILPGPPPP 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,764,500
Number of Sequences: 59808
Number of extensions: 252191
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)