Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C20
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64640.1 68418.m08124 pectinesterase family protein contains ...    29   3.1  
At5g02480.1 68418.m00181 expressed protein p                           28   9.6  

>At5g64640.1 68418.m08124 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 602

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 840 PTSXDHPPGXXPLXPPP 890
           PTS DHPP   P  PPP
Sbjct: 73  PTSDDHPPPETPPSPPP 89


>At5g02480.1 68418.m00181 expressed protein p
          Length = 508

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 144 KVSKFSLQRFCKIWYEWFF*SFY 76
           KV+K  L+R   +W  WFF SFY
Sbjct: 94  KVAKKCLKRGDSMWGAWFFFSFY 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,197,360
Number of Sequences: 28952
Number of extensions: 202360
Number of successful extensions: 433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)