Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C19
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   193   1e-49
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   191   5e-49
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     31   0.013
05_02_0037 + 5883285-5884292                                           31   0.83 
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     31   1.1  
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    30   2.5  

>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  193 bits (471), Expect = 1e-49
 Identities = 91/168 (54%), Positives = 110/168 (65%)
 Frame = +1

Query: 109 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 288
           MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 289 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 468
                               YGKPK  G+ QLK  RN +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 469 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAG 612
           V +DS+YKYFE+ILVD +H AIR DP+INW+   VHKHRE+RGLTSAG
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAG 168


>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  191 bits (466), Expect = 5e-49
 Identities = 90/167 (53%), Positives = 109/167 (65%)
 Frame = +1

Query: 112 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 291
           GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166

Query: 292 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 471
                              YGKPK  G+ QLK  RN +S+AEE            +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226

Query: 472 AQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAG 612
            +DS+YKYFE+ILVD +H AIR DP+INW+   VHKHRE+RGLTSAG
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAG 273


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 31.5 bits (68), Expect(2) = 0.013
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 496 FEVILVDPSHKAIRRDPK 549
           FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316



 Score = 25.0 bits (52), Expect(2) = 0.013
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 349 YGKPKSHGVNQLKPTRN 399
           Y KPK  G+ QLK  RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 192 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 344
           AV   ++ AP ++  +A +SP        C  R CC  +P + WWP+     GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 420 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 292
           +++ G +V  G++ V  +ALGL ++GT   W L   T  +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629


>09_06_0328 +
           22365308-22365415,22365743-22366018,22366166-22366417,
           22366542-22366939,22367028-22368021,22368199-22368409,
           22368515-22368749,22368874-22368996,22369190-22369310,
           22369416-22369625
          Length = 975

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  TVYCGTRETSATGC*DGCLQIYS 131
           TV  G     A GC DGCLQ+Y+
Sbjct: 657 TVLAGNANFWAVGCEDGCLQVYT 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,257,463
Number of Sequences: 37544
Number of extensions: 475617
Number of successful extensions: 986
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)