Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C19
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             215   4e-56
SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)                    31   1.5  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   4.5  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  215 bits (525), Expect = 4e-56
 Identities = 101/168 (60%), Positives = 119/168 (70%)
 Frame = +1

Query: 109 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 288
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60

Query: 289 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 468
                             ATYGKP + GVN+LK  R+L+S+AEE            +SYW
Sbjct: 61  IYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120

Query: 469 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAG 612
           V QDS YKYFEVI+VDP HKAIRRD +INWI    HKHRE+RGLT+AG
Sbjct: 121 VGQDSIYKYFEVIMVDPFHKAIRRDARINWICKPTHKHRELRGLTAAG 168


>SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)
          Length = 508

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 168 THNIAQFFPIQLLNISVGTHLSSLWQTSRVSHSKP*KKTKLKILRD 31
           T  +A FF  Q L +S+  ++  LWQ  + S+ +P  K+ L  +RD
Sbjct: 5   TSELASFFQRQKLVLSLDFYMDQLWQ--QFSNGEPLNKSMLAFVRD 48


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 166 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 279
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,690,268
Number of Sequences: 59808
Number of extensions: 559127
Number of successful extensions: 1145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)