Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C18
         (973 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    33   0.080
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.57 
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.0  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   4.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   9.2  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 32.7 bits (71), Expect = 0.080
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 43  YNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 135
           Y++ YN+   M T++C+C+S  +  YGGN A
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLA 76


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 405 PPXPPPPXXXPPPXPP 452
           PP PPPP   PP  PP
Sbjct: 10  PPPPPPPGFEPPSQPP 25



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = +3

Query: 405 PPXPP---PPXXXPPPXPP 452
           PP PP   PP   PPP PP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 405 PPXPPPPXXXPPPXPP 452
           PP PPPP    PP  P
Sbjct: 9   PPPPPPPPGFEPPSQP 24


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 289 SPSCPTALRSPEAFTIVPSSQGIVELAIVDEEQDVVFVLGGL 164
           +P CPT LR       +P +  ++ L  VDE  D+   + G+
Sbjct: 309 NPECPTLLRKFSERLQIPVTTSLLGLGAVDERSDLSLHMLGM 350


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 405  PPXPPPPXXXPPPXPPXTXXQVP 473
            PP P P    PP  PP T   VP
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 405  PPXPPPPXXXPPPXPPXTXXQVPGXXGXP 491
            PP P P    P P P      VP   G P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 475 PGTWXXVXGGXGGGXXXGGGGXGG 404
           PG +    GG GGG    GGG GG
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGG 253



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 475 PGTWXXVXGGXGGGXXXGGGGXGG 404
           PG +    GG GGG    GGG GG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGG 260



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 475 PGTWXXVXGGXGGGXXXGGGGXGG 404
           PG +    GG GGG    GGG GG
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGG 267


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 390  LTKXXPPXPPPPXXXPPPXPPXTXXQVPGXXGXP 491
            L K  PP   P    PP  PP     + G  G P
Sbjct: 1890 LPKAGPPSAAPTSALPPAGPPAGATAISGNPGMP 1923


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 250 TPRETARPLDTMVKSPVFLTSTRGSLHLSKRPKTLL 357
           TPRETA+ L  ++ +P      R SL     PK LL
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSL---TTPKDLL 239


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
 Frame = +3

Query: 405 PPXPPPP----XXXPPPXPP 452
           PP PPPP       PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +3

Query: 405  PPXPP-PPXXXPPPXPPXTXXQVP 473
            PP P  PP   PPP P  +   VP
Sbjct: 1721 PPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 365  MNNVINEHSYQTXXPXTSPPPXXPPP 442
            +N V N+ S     P   PPP  PPP
Sbjct: 928  VNIVANDTSVAGVMPAFPPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,899
Number of Sequences: 5004
Number of extensions: 40342
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)