Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C18
         (973 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   9.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 416 SPPPXXPPPXPPXXXXPST 472
           +PP   PPP PP    P +
Sbjct: 337 TPPKPAPPPPPPSSSGPDS 355


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 389 NARLLHYS*TYNSVFGRLER 330
           N   +HY+  Y+S++GR +R
Sbjct: 592 NQAAIHYNLPYSSLYGRFKR 611


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 407 PXTSPPPXXPPPXPP 451
           P   PPP  PP  PP
Sbjct: 42  PSQGPPPGGPPGAPP 56


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 332 RCNEPRVDVRKTGDFTIVSNGLAVSRG 252
           +CN+ + D+ +TG      +G   SRG
Sbjct: 67  QCNDKKTDIEETGRGKGRGHGKGGSRG 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,811
Number of Sequences: 438
Number of extensions: 5471
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)