Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C16
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    26   8.1  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   8.1  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   8.1  

>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 793 LPVLVELWVNTEPFXGTVV 849
           LPV+ ELW N  PF   V+
Sbjct: 102 LPVIQELWNNPSPFFAVVL 120


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 321 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEKRQNLLLLF 163
           DL HH +  F GF VC+  ++  + + + D + L   ++ +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +1

Query: 634 ICYNYGIIKENEQFVMYAQLFQFPDXXXXXXXXXXXXXXMLGLNAYYYYFHSHLPVL 804
           +C +  ++      ++Y + F FP               + GLNA++YY    LP++
Sbjct: 238 LCVSLFLVNIIADRILYGR-FVFPIISFFQFNVTSGLSSLYGLNAWHYYLSQALPLI 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,568
Number of Sequences: 5004
Number of extensions: 69171
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)