Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C15
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0206 + 41990251-41992032,41992131-41992361                       34   0.17 
01_03_0237 + 14068713-14069315,14069654-14069914                       29   3.6  
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071...    29   4.7  
07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217...    29   6.3  
08_01_1027 - 10373760-10373837,10373918-10374201,10374286-10374394     28   8.3  
04_04_1179 - 31512592-31515126                                         28   8.3  
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105...    28   8.3  

>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
 Frame = +2

Query: 146 YWEDEEGYPVSGQFSKRHPRDVTWDKQVGG-----GKVFGTLGQNDDGLFGKAGYNREIF 310
           Y  D EG P+    S+R  R   W++Q+GG      +++G     D  L     +NR+  
Sbjct: 216 YQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKD--LLTLYNFNRQYV 273

Query: 311 NDDRGKLTGQAYGTRVLGPAGGQYKLRWSSRL 406
           N D+  L+ QA  + +     GQ+K  W  R+
Sbjct: 274 NMDKTWLSKQAEMSTL---QLGQWKPSWRHRI 302


>01_03_0237 + 14068713-14069315,14069654-14069914
          Length = 287

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +3

Query: 201 RVTSPGTNKWGEGRSSARWAKMMMGFLVKPVTTERSSMMTAAN*PGRPTAPGSWDPQGDS 380
           R   PGT + G     + WA+ +    ++    E  +  T +   GR T+PG W      
Sbjct: 166 RRLGPGTQRGGCRAEGSTWARGLASPGLQLKKRELEARRTESEKSGRDTSPGEWRSSSSR 225

Query: 381 TNYG 392
            + G
Sbjct: 226 LDLG 229


>08_02_0975 +
           23205590-23205733,23206813-23206894,23207017-23207127,
           23207212-23208006,23208338-23208704,23209219-23209300,
           23209477-23209532,23209888-23209942
          Length = 563

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +3

Query: 273 GFLVKPVTTERSSM-MTAAN*PGRPTAPG--SWDPQGDSTNYGGRLDWANENAKAAIDLN 443
           GFLV         + +++ N PG PT+PG  S++ QG +T  G +  W++E  + A+  N
Sbjct: 155 GFLVNGTGAMNKGLSVSSQNKPGAPTSPGTPSYNRQG-ATVVGYQQGWSSE--RVALSSN 211

Query: 444 RQ 449
            Q
Sbjct: 212 GQ 213


>07_01_0303 -
           2171796-2172611,2173133-2174062,2174659-2175132,
           2175569-2175609,2176298-2176337
          Length = 766

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
 Frame = -1

Query: 550 PNSLETTPPADK*VFLPRSHTPEADASIPA-LPPICLFKSIAALAFSLAQSRRPP*FVLS 374
           P +    PPA+  V LP +  PE  A++PA +PP    + +A+L  +L  +  PP  V S
Sbjct: 568 PGAPAPPPPANIPVNLPANVPPEMPANLPANVPP----EMLASLPANL-PANVPPEMVAS 622

Query: 373 PCGSQDPGAVG-LPGQFAAVIIEDLSVVTGFTKKPIIILAQRAEDLPSPHLF-VPGDVTR 200
              +  P  +  +P   +  ++ +L       K P  +  +   D+P   L  +P DV +
Sbjct: 623 LPANVPPETLSKIPANVSPDVLANLPPDV-LAKLPANVSPEMLADMPPEVLVNLPPDVQK 681


>08_01_1027 - 10373760-10373837,10373918-10374201,10374286-10374394
          Length = 156

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 496 ILVRILTCQLAEWSLRSSVTEGLMSVYRPRLLTSGNCQ 609
           I+ RIL  +  EW L S V   +M    P L  SGN +
Sbjct: 82  IMERILREEAEEWELESEVRREIMEHIFPLLRRSGNAR 119


>04_04_1179 - 31512592-31515126
          Length = 844

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 181 TANWISFFVLPINFCVDTH 125
           TA+W +F VLP N+C+  H
Sbjct: 86  TASWYNFSVLPGNYCLRLH 104


>02_01_0148 -
           1051121-1051192,1051378-1051512,1052343-1052396,
           1052501-1052581,1052667-1052826,1053346-1053453,
           1053543-1053718,1053952-1054002,1054154-1054264,
           1054493-1054547,1055667-1055789,1055922-1056007,
           1056235-1056349,1056429-1056667
          Length = 521

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 178 ANWISFFVLPINFCVDTHQDRGEEI 104
           A W  F  LP  + +D H DR E++
Sbjct: 69  ALWAHFHRLPARYALDVHADRAEDV 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,165,427
Number of Sequences: 37544
Number of extensions: 517173
Number of successful extensions: 1305
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)