Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C15
         (859 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               30   2.1  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   3.7  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   28   8.5  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 QVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG 349
           Q G G  FGT      GLFG AG N        G +TG  +G
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFG 89


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 571 PTSGLL*PNSLETTPPADK*VFLPRSHTPEA-DASIPALPPICLFKSIAALAFSLAQSRR 395
           P+  ++ P+ + + P     V    S  P A  AS+P  PP+ +  +  + +  +A +  
Sbjct: 135 PSQSVVNPSPIVSAPVEPSSVVASISFKPSAAGASVPTAPPVPVVSATFSPSVVVASALV 194

Query: 394 PP*FVLSPCGSQDPGAVGLPGQFAAVII 311
            P  V SP  S+    +G     ++V++
Sbjct: 195 APSVVASPISSEPSVKLGSTSAASSVVV 222


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
 Frame = -1

Query: 571 PTSGLL*PNSLETTPPADK*VFLPRSHTPEADASIPALPPICLFKSIAALAFSLAQ-SRR 395
           P+SG+  P  +   PP+   VF P S  P    + PA PP  +F   + +   + +    
Sbjct: 486 PSSGV--PTPVAAPPPS---VFAPSSGVPTTVTAPPAAPPPSVFAPSSGVPTPVTEPPPA 540

Query: 394 PP*FVLSP-CGSQDPGAVGLPGQFAAVIIEDLSVVTGFTKKP 272
           PP  V +P  G   P     P    +V     +V T  T  P
Sbjct: 541 PPPSVFAPSSGVPTPVTAPPPAPPPSVFAPSSAVPTPATAPP 582


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 176 SGQFSKRHPRDVTWDKQVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTR 355
           S   S+  P+  +W ++     VF       D  F + G+ R+  ++ RG+    A  T 
Sbjct: 692 SSSTSESSPKRFSWSQENSKDVVFAGPDLPADNPFNREGFGRQSMSEKRGRAAVDAKKTE 751

Query: 356 V 358
           V
Sbjct: 752 V 752


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,880,488
Number of Sequences: 59808
Number of extensions: 576546
Number of successful extensions: 1296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)