Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C15
         (859 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14570.2 68414.m01733 UBX domain-containing protein contains ...    29   4.0  
At1g14570.1 68414.m01732 UBX domain-containing protein contains ...    29   4.0  
At5g25320.1 68418.m03004 ACT domain-containing protein contains ...    28   6.9  
At3g03090.1 68416.m00305 sugar transporter family protein simila...    28   9.1  
At1g43330.1 68414.m04995 myb family protein-related contains sim...    28   9.1  

>At1g14570.2 68414.m01733 UBX domain-containing protein contains
           Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
           interaction motif
          Length = 468

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 300 ERSSMMTAAN*PGRPTAPGSWDP-QGDSTNYGGRLDWANENAKAAID 437
           E +S++   N    P +PG W+P +GDS+        A+E+A A  D
Sbjct: 123 EPNSLIAFRNFSEEPKSPGIWEPDEGDSSASASASASASESASAPRD 169


>At1g14570.1 68414.m01732 UBX domain-containing protein contains
           Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
           interaction motif
          Length = 468

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 300 ERSSMMTAAN*PGRPTAPGSWDP-QGDSTNYGGRLDWANENAKAAID 437
           E +S++   N    P +PG W+P +GDS+        A+E+A A  D
Sbjct: 123 EPNSLIAFRNFSEEPKSPGIWEPDEGDSSASASASASASESASAPRD 169


>At5g25320.1 68418.m03004 ACT domain-containing protein contains
           Pfam ACT domain PF01842
          Length = 500

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 310 EDLSVVTGFTKKPIIILAQRAEDLPSPHLFVPGDVTRVSL*KLTANWI 167
           ED  + T  + +P    +   +  P PH F  GD+ R  + +L+ N++
Sbjct: 450 EDTKIDTVGSDEPTASASATPQRQPQPHRFSLGDILRSQMERLSLNFV 497


>At3g03090.1 68416.m00305 sugar transporter family protein similar
           to xylose permease [Bacillus megaterium]  GI:1924928;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 503

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 523 ADK*VFLPRSHTPEADASIPALPPICLFKSIAALAF 416
           A+K   L  +H+PE  + + A+PP  LF ++ AL F
Sbjct: 27  AEKEPLLKENHSPENYSVLAAIPPF-LFPALGALLF 61


>At1g43330.1 68414.m04995 myb family protein-related contains
           similarity to myb protein [Gallus gallus]
           gi|63628|emb|CAA32767
          Length = 118

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 721 ICNYLSAFCXFLFNHQHSSNI 783
           ICNY+  F   LFN+   SNI
Sbjct: 78  ICNYVYIFLSILFNYNKKSNI 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,956,704
Number of Sequences: 28952
Number of extensions: 392202
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)