Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C14
         (1049 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.002
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.15 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.36 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   2.7  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   4.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +1

Query: 691 PPXPGGXGXXXPPPPPXXXXXPPPPPPP 774
           PP P   G   PPPPP      PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 35.5 bits (78), Expect = 0.013
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = +1

Query: 694 PXPGGXGXXXPPPPPXXXXXPPPPPPPXXXFXFXXAGXPASXFPP 828
           P P       PPP P     PPPPPPP        AG P    PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP----GVAGAGPPPPPPPP 782



 Score = 34.7 bits (76), Expect = 0.022
 Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +1

Query: 673 PXXXKXPPXPGGXGXXXPPPPP--XXXXXPPPPPPP 774
           P     PP     G   PPPPP       PPPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +1

Query: 691 PPXPG--GXGXXXPPPPP 738
           PP PG  G G   PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 724 PPPPPXXXXXPPPPPPP 774
           PPPPP     P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAP 748


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +1

Query: 712 GXXXPPPPPXXXXXP--PPPPPP 774
           G   PPPPP     P  PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 22.2 bits (45), Expect(2) = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 757 PPPPPPXXXF 786
           PPPPPP   F
Sbjct: 9   PPPPPPPPGF 18



 Score = 21.8 bits (44), Expect(2) = 8.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 733 PPXXXXXPPPPP 768
           PP     PPPPP
Sbjct: 5   PPGNPPPPPPPP 16


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 691 PPXPGGXGXXXPPPPPXXXXXPPPPPP 771
           PP P        P PP     PPPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 23/90 (25%), Positives = 26/90 (28%)
 Frame = +3

Query: 753  PPXPPPTTXXFXFXXRGXXXXXXPPPXXGXXFFXKXPNXXASSXLXXXGGGPLPFLXXXA 932
            PP PPP++               PPP        K P    SS        P P     A
Sbjct: 290  PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP-RSNAA 348

Query: 933  XGXGXXFXXPXXPPPPPPXXGGXRXRRXXP 1022
                        PPPPPP       R+  P
Sbjct: 349  GSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 691 PPXPGGXGXXXPPPPPXXXXXPPPPPPP 774
           PP P G     P PP      P P P P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 724  PPPPPXXXXXPPPPPPPXXXFXFXXAGXPASXFPPXXXGS 843
            P PPP     PPPP  P        AG P++  PP    S
Sbjct: 1705 PTPPPPPMSVPPPPSAPP-----MPAGPPSAPPPPLPASS 1739



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 691  PPXPGGXGXXXPPPPPXXXXXPPPPPPP 774
            PP P       P  PP     P  PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 767 GGGGGXXXXXGGGGGXXXPXPPGXGG 690
           G  GG     GGG G   P P G GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGG 209



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 770 GGGGGGXXXXXGGGGGXXXPXPPGXGGXFXXWG 672
           G  GGG     GG GG   P  PG  G F  +G
Sbjct: 184 GHNGGGFGGFGGGSGG--PPPGPGGFGGFGGFG 214


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect(2) = 2.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 754 PPPPPPPXXXFXFXXAGXPASXFPPXXXGSXF 849
           PPPPPPP     +  +  PA        G+ F
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAPADNKGDMGAVF 338



 Score = 20.6 bits (41), Expect(2) = 2.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 703 GGXGXXXPPPPP 738
           GG     PPPPP
Sbjct: 303 GGLPPPPPPPPP 314


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 712 GXXXPPPPPXXXXXPPPPPPP 774
           G   PPPP      PP  PPP
Sbjct: 44  GLTIPPPPSVDHSAPPSGPPP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,119
Number of Sequences: 5004
Number of extensions: 33822
Number of successful extensions: 302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)