Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C13
         (1083 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.12 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.16 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.0  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +1

Query: 541  PPPXPXPAXPXPXXPXXXXXPXSXGXAPPPPXP 639
            PPP P    P P  P     P S   APPPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPS---APPPPLP 1736



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
 Frame = +2

Query: 1010 PTXXPPP---XPPPXXXPAXAXPP 1072
            PT  PPP    PPP   P  A PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
 Frame = +1

Query: 541 PPPXPXPAXPXPXX---PXXXXXPXSXGXAPPPPXPXXXGGXXTP 666
           PPP P    P P     P     P   G  PPPP P   G    P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +1

Query: 541 PPPXPXPAXPXPXXPXXXXXPXSXGXAPPPPXP 639
           PPP P    P P  P     P   G  PPPP P
Sbjct: 752 PPPAPIMGGPPPPPPP----PGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +2

Query: 938  PPPXXPXXXXXXXXXXXXXXXXXXPTXXPPPXPPPXXXPAXAXPP 1072
            PPP  P                  P    PP PPP    A A PP
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 24.6 bits (51), Expect(2) = 3.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 1022 PPPXPPPXXXPAXAXPP 1072
            PPP PPP    A   PP
Sbjct: 762  PPPPPPPGVAGAGPPPP 778



 Score = 21.0 bits (42), Expect(2) = 3.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 914 PXSPTPXGPPPXXP 955
           P +P   GPPP  P
Sbjct: 753 PPAPIMGGPPPPPP 766


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = +1

Query: 541 PPPXPXPAXPXPXXPXXXXXPXSXGXAPPPPXPXXXGGXXTP 666
           PPP P P+      P       +    PPPP P        P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 1010 PTXXPPPXPPPXXXPAXAXPP 1072
            P   PPP PPP   P    PP
Sbjct: 6    PGNPPPPPPPPGFEPPSQPPP 26


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
 Frame = +1

Query: 541  PPPXPXPAXPXPXXPXXXXXPXSXGXAP--PPPXP 639
            P P P  A P P        P S   AP  PPP P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +1

Query: 541  PPPXPXPAXPXPXXPXXXXXPXSXGXAPPPPXP 639
            PPP P P+   P  P     P     +  PP P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,505
Number of Sequences: 5004
Number of extensions: 13722
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 569764052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)