Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_C12
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 160 2e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 87 3e-18
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 75 1e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 62 8e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 42 2e-04
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 41 2e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 38 0.002
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 27 3.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 4.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 8.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 160 bits (389), Expect = 2e-40
Identities = 86/140 (61%), Positives = 93/140 (66%)
Frame = +2
Query: 272 PAIRGVMVGMGQKDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 451
P G+MVGMGQKDSYVGDEAQS RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 452 PEEXPVLLTEAPLNPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASGSYXRVSCWDS 631
PEE P LLTEAPLNP+ R + +AP + VLSLYASG + DS
Sbjct: 98 PEEHPCLLTEAPLNPKS-NREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGI-VLDS 155
Query: 632 XDRCLPTPCPSTKDTHSPHA 691
D T P + PHA
Sbjct: 156 GDGVTHT-VPIYEGYALPHA 174
Score = 86.6 bits (205), Expect = 4e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +1
Query: 163 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 285
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 87.0 bits (206), Expect = 3e-18
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Frame = +2
Query: 287 VMVGMGQKDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEX 463
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEE
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 464 PVLLTEAPL-NPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASGSYXRV--SCWDSX 634
P+LLTE PL N + ++ ++ + P + +PVL+LYAS + C D
Sbjct: 107 PLLLTEPPLANIRNKEKI--AEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGL 164
Query: 635 DRCLP 649
+P
Sbjct: 165 THSVP 169
Score = 52.4 bits (120), Expect = 8e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +1
Query: 181 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 282
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 613 GIVLGLXGPVSPHTVPIYEGYALP 684
GIVL G H+VPIY+G+++P
Sbjct: 155 GIVLEC-GDGLTHSVPIYDGFSIP 177
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 75.4 bits (177), Expect = 1e-14
Identities = 28/63 (44%), Positives = 48/63 (76%)
Frame = +2
Query: 308 KDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEXPVLLTEAP 487
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 488 LNP 496
+NP
Sbjct: 110 MNP 112
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 169 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 273
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 62.5 bits (145), Expect = 8e-11
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 311 DSYVGDEAQSXRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEXPVLLTEAP 487
D ++G++A +L YPI HG + NWD ME+ W + + LR PE+ LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 488 LNP 496
LNP
Sbjct: 133 LNP 135
Score = 40.7 bits (91), Expect = 3e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 181 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 264
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 272 PAIRGVMVGMGQKDSYVGDEAQSXRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 445
P+ GV + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 446 VAPEEXPVLLTEAPLNPQGXQR 511
V P E +++TE NPQ ++
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQ 118
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 166 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 267
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 166 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGR--YGTEGLLCRR*GTE 339
+EV+A+V+D GS + GF+G+D P+ V PS G + DGR +G E + G E
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG----EFSDGRRLFGEEYIYKSNPGME 64
Query: 340 XK 345
K
Sbjct: 65 IK 66
Score = 39.1 bits (87), Expect = 8e-04
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 353 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEXPVLLTEAPLNP 496
+ +K I +G V NWD +W + +L+ P E P+L+TE NP
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 299 MGQKDSYVGDEAQSXRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEXPVLL 475
+ + + VG++ G ++ + P E +++NWD ME++ +TF +L + E P+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 476 TEAPLNP 496
TE NP
Sbjct: 121 TEPLANP 127
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 181 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 276
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 434 NELRVAPEEXPVLLTEAP--LNPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASGSY 607
N +V P+E +P ++P DD N+ H+P ++ + PV+ + S+
Sbjct: 97 NRSKVNPQEYSEFSVASPQTISPSLPLNLDDETVSENVPHSPQSSNDAIPVIKITEENSF 156
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 364 FEGQDTSXALCLISYIRVLLSHTDHHA 284
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 449 APEEXPVLLTEAPLNPQGXQRXDDPDHVRNIXHAPPCTSPSKPV 580
+P+E L P Q + D PD RNI P S +P+
Sbjct: 501 SPKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPI 544
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 8.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 368 PIEHGIVTNWDDMEKIWHHTF 430
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,643,240
Number of Sequences: 5004
Number of extensions: 74470
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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