Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_C12
(896 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 1e-40
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 1e-40
SB_56| Best HMM Match : Actin (HMM E-Value=0) 164 1e-40
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 164 1e-40
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 2e-40
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 1e-21
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 3e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 3e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 50 2e-06
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 48 1e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 35 0.078
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 34 0.14
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 34 0.18
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 32 0.55
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 31 0.96
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.96
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 30 2.2
SB_46803| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7) 30 2.9
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064) 29 5.1
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 29 6.7
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_13048| Best HMM Match : Fork_head (HMM E-Value=0) 29 6.7
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 8.9
SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5) 28 8.9
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 164 bits (398), Expect = 1e-40
Identities = 88/140 (62%), Positives = 96/140 (68%)
Frame = +2
Query: 272 PAIRGVMVGMGQKDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 451
P +GVMVGMGQKDSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 452 PEEXPVLLTEAPLNPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASGSYXRVSCWDS 631
PEE PVLLTEAPLNP+ R + ++P + VLSLYASG + DS
Sbjct: 99 PEEHPVLLTEAPLNPKA-NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDS 156
Query: 632 XDRCLPTPCPSTKDTHSPHA 691
D T P + PHA
Sbjct: 157 GDGVTHT-VPIYEGYALPHA 175
Score = 89.8 bits (213), Expect = 3e-18
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = +1
Query: 157 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 285
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 164 bits (398), Expect = 1e-40
Identities = 88/140 (62%), Positives = 96/140 (68%)
Frame = +2
Query: 272 PAIRGVMVGMGQKDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 451
P +GVMVGMGQKDSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 97
Query: 452 PEEXPVLLTEAPLNPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASGSYXRVSCWDS 631
PEE PVLLTEAPLNP+ R + ++P + VLSLYASG + DS
Sbjct: 98 PEEHPVLLTEAPLNPKA-NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDS 155
Query: 632 XDRCLPTPCPSTKDTHSPHA 691
D T P + PHA
Sbjct: 156 GDGVTHT-VPIYEGYALPHA 174
Score = 87.0 bits (206), Expect = 2e-17
Identities = 38/41 (92%), Positives = 41/41 (100%)
Frame = +1
Query: 163 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 285
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 164 bits (398), Expect = 1e-40
Identities = 88/140 (62%), Positives = 96/140 (68%)
Frame = +2
Query: 272 PAIRGVMVGMGQKDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 451
P +GVMVGMGQKDSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 97
Query: 452 PEEXPVLLTEAPLNPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASGSYXRVSCWDS 631
PEE PVLLTEAPLNP+ R + ++P + VLSLYASG + DS
Sbjct: 98 PEEHPVLLTEAPLNPKA-NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDS 155
Query: 632 XDRCLPTPCPSTKDTHSPHA 691
D T P + PHA
Sbjct: 156 GDGVTHT-VPIYEGYALPHA 174
Score = 88.2 bits (209), Expect = 8e-18
Identities = 39/41 (95%), Positives = 41/41 (100%)
Frame = +1
Query: 163 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 285
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 164 bits (398), Expect = 1e-40
Identities = 88/140 (62%), Positives = 96/140 (68%)
Frame = +2
Query: 272 PAIRGVMVGMGQKDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 451
P +GVMVGMGQKDSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 452 PEEXPVLLTEAPLNPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASGSYXRVSCWDS 631
PEE PVLLTEAPLNP+ R + ++P + VLSLYASG + DS
Sbjct: 99 PEEHPVLLTEAPLNPKA-NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDS 156
Query: 632 XDRCLPTPCPSTKDTHSPHA 691
D T P + PHA
Sbjct: 157 GDGVTHT-VPIYEGYALPHA 175
Score = 94.3 bits (224), Expect = 1e-19
Identities = 41/43 (95%), Positives = 43/43 (100%)
Frame = +1
Query: 157 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 285
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 163 bits (396), Expect = 2e-40
Identities = 80/110 (72%), Positives = 86/110 (78%)
Frame = +2
Query: 272 PAIRGVMVGMGQKDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 451
P +GVMVGMGQKDSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 98
Query: 452 PEEXPVLLTEAPLNPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASG 601
PEE PVLLTEAPLNP+ R + ++P + VLSLYASG
Sbjct: 99 PEEHPVLLTEAPLNPKA-NREKMTQIMFETFNSPAMYVAIQAVLSLYASG 147
Score = 89.8 bits (213), Expect = 3e-18
Identities = 38/43 (88%), Positives = 42/43 (97%)
Frame = +1
Query: 157 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 285
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 100 bits (240), Expect = 1e-21
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = +2
Query: 272 PAIRGVMVGMGQKDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTF 430
P +GVMVGMGQKDSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 38 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 88.2 bits (209), Expect = 8e-18
Identities = 38/41 (92%), Positives = 41/41 (100%)
Frame = +1
Query: 163 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 285
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = +1
Query: 613 GIVLGLXGPVSPHTVPIYEGYALPPRPSWGLDLAGSPTLXDY 738
GIV+ V+ HTVPIYEGYAL P LDLAG L DY
Sbjct: 113 GIVMDSGDGVT-HTVPIYEGYAL-PHAIIRLDLAGR-DLTDY 151
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 73.3 bits (172), Expect = 2e-13
Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +2
Query: 308 KDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEXPVLLTEA 484
KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEP 112
Query: 485 PLNP 496
PLNP
Sbjct: 113 PLNP 116
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 175 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 273
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 3e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 166 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 282
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 3e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 181 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 282
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 45.6 bits (103), Expect = 5e-05
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +2
Query: 410 KIWHHTFYNELRVAPEEXPVLLTEAPLNPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSL 589
K+W H F ++LRV E+ PVLLTEAPLNP+ R + + P + V++L
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPK-MNRERMVQLMFESFNVPCMYVAVQAVMAL 2187
Query: 590 YASG 601
YASG
Sbjct: 2188 YASG 2191
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 649 HTVPIYEGYALPPRPSWGLDLAG 717
HTVP+Y+GY L P + +DLAG
Sbjct: 2206 HTVPVYDGYWL-PHATQRIDLAG 2227
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 50.4 bits (115), Expect = 2e-06
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = +2
Query: 296 GMGQKDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEXPVLL 475
G+ D ++GDEA T K+PI H IV +WD ME+ W + LR PE+ LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1
Query: 151 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 276
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQ 734
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 7e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 279 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 163
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 35.1 bits (77), Expect = 0.078
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 317 YVGDEAQSXRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 439
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 169 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGR 288
++A LV+D G+ K GFA + APR++ P+ + + + + R
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSERR 270
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 34.3 bits (75), Expect = 0.14
Identities = 23/42 (54%), Positives = 24/42 (57%)
Frame = +1
Query: 613 GIVLGLXGPVSPHTVPIYEGYALPPRPSWGLDLAGSPTLXDY 738
G+V VS H VPIYEGYAL P LDLAG L DY
Sbjct: 29 GVVFDSGDGVS-HNVPIYEGYAL-PHAILRLDLAGR-DLTDY 67
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = +2
Query: 458 EXPVLLTEAPLNPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASG 601
+ PVLLTEAPLNP+ R + + P + VLSLYA+G
Sbjct: 126 QHPVLLTEAPLNPR-RNREKAAEVFFETFNVPALFISMQAVLSLYATG 172
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 613 GIVLGLXGPVSPHTVPIYEGYALP 684
G+VL VS H+VPIYEG+A+P
Sbjct: 176 GVVLDAGDGVS-HSVPIYEGFAMP 198
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 33.1 bits (72), Expect = 0.31
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 1/116 (0%)
Frame = +3
Query: 423 IPSTMSCVSPPRNXQSCSLRL-PSTPKAXREXMTQIMFETFXTPRHVRRHPSPCSRCTRP 599
+P+T S S P + S + PSTP T M T TP +PC+ T
Sbjct: 221 MPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPCTPNTPS 280
Query: 600 GRTXGYRAGTPGTGVSPHRAHLRRIRTPPTPILGSGLSRVADPXRLPSXKILPRAP 767
+ TP T +P TP TP S S + P PS P+ P
Sbjct: 281 TPSTPSMPSTPSTPSTP--------STPSTPSTPSAPSTPSTP-STPSTPSTPKTP 327
Score = 33.1 bits (72), Expect = 0.31
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 1/116 (0%)
Frame = +3
Query: 423 IPSTMSCVSPPRNXQSCSLRL-PSTPKAXREXMTQIMFETFXTPRHVRRHPSPCSRCTRP 599
+P+T S S P + S + PSTP T M T TP +PC+ T
Sbjct: 771 MPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPCTPNTPS 830
Query: 600 GRTXGYRAGTPGTGVSPHRAHLRRIRTPPTPILGSGLSRVADPXRLPSXKILPRAP 767
+ TP T +P TP TP S S + P PS P+ P
Sbjct: 831 TPSTPSMPSTPSTPSTP--------STPSTPSTPSAPSTPSTP-STPSTPSTPKTP 877
Score = 32.7 bits (71), Expect = 0.41
Identities = 35/115 (30%), Positives = 41/115 (35%), Gaps = 1/115 (0%)
Frame = +3
Query: 426 PSTMSCVSPPRNXQSCSL-RLPSTPKAXREXMTQIMFETFXTPRHVRRHPSPCSRCTRPG 602
PST S P + S R PSTP T T TPR +PC+ T
Sbjct: 377 PSTPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPR---TPSTPCTHSTPGT 433
Query: 603 RTXGYRAGTPGTGVSPHRAHLRRIRTPPTPILGSGLSRVADPXRLPSXKILPRAP 767
+ TP T +P H TP TP S S + P PS P P
Sbjct: 434 PSTPSTPSTPSTPSTPSLTHTP--STPSTPSTPSTPSTPSTP-STPSTPSTPSTP 485
Score = 32.3 bits (70), Expect = 0.55
Identities = 34/118 (28%), Positives = 41/118 (34%), Gaps = 4/118 (3%)
Frame = +3
Query: 426 PSTMSCVSPPRNXQS----CSLRLPSTPKAXREXMTQIMFETFXTPRHVRRHPSPCSRCT 593
PST S S PR + C+ PSTP T T TP +P + CT
Sbjct: 21 PSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPSTPSTPCT 80
Query: 594 RPGRTXGYRAGTPGTGVSPHRAHLRRIRTPPTPILGSGLSRVADPXRLPSXKILPRAP 767
+ TP T +P TP TP S S + P PS P P
Sbjct: 81 PSTPSTPSTPSTPSTPSTPSAPSTP--STPSTPSTPSTPSTPSTP-STPSAPSTPSTP 135
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 32.3 bits (70), Expect = 0.55
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +2
Query: 221 SQEMMLLAPCSPRSWEGPAIRGVMVGMGQKDSYVGDEAQ 337
S E + APCSPRS P I G M G G + S+V +E +
Sbjct: 803 SLESSIEAPCSPRSASKPVISGEMNG-GPRASHVIEETE 840
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.96
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 254 GNTARGASSPAKPALHIPEPLSTT 183
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 31.5 bits (68), Expect = 0.96
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 368 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEXPVLLTEAPLN 493
PI+ G++ +WD EKI + + ++ P+L++EA N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWN 44
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.96
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 254 GNTARGASSPAKPALHIPEPLSTT 183
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 621 AGTPGTGVSPHRAHLRRIRTPPTPILGSGLSR 716
A PGT +PH + TPP SGLSR
Sbjct: 889 ASRPGTETTPHHSDTPNTETPPNSANTSGLSR 920
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 254 GNTARGASSPAKPALHIPEPLSTT 183
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
Length = 1592
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 493 VEGSLSEQDWXFLGGDTQLIVEGMMPNLLHVI 398
+ SL++Q+W + D Q+IVEG M N ++I
Sbjct: 1329 IRQSLTKQEWRWQMDDPQMIVEGAMQNHYNMI 1360
>SB_46803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Frame = +3
Query: 444 VSPPRNXQSCSLRLPSTPKAXREXMTQIMFET-FXTPRHVRRHPSPCSRCTRPGRTXGYR 620
V PP +S +R PST K+ + + T TP V+ ++ PG +
Sbjct: 1 VRPPSTVKSAQVRTPSTVKSAQVRTPSTVISTQVRTPSTVK-----SAQVRTPGTVKSAQ 55
Query: 621 AGTPGTGVS-----PHRAHLRRIRTPPTPI 695
TPGT S P ++RTP T I
Sbjct: 56 VRTPGTVKSAQVRTPGTVKSAQVRTPSTVI 85
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 29.9 bits (64), Expect = 2.9
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Frame = +2
Query: 164 TKKLPRW**TMAPVCARPVSQEMMLLAPCSPRSWEGPAIRGVMVGMGQKDS---YVGDEA 334
T+K P++ PV R ++ + L +P+++ + G+ DS VG++
Sbjct: 62 TRKNPQFEPGFEPVPQRWITVQGWLGNRQNPKTYVQELSGKIGGRKGEPDSGGLAVGNDI 121
Query: 335 QSXRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEXPVLLTEAPLNPQGX 505
S I L+ P + +VT+++ E++ H F + P PV++TE NP
Sbjct: 122 GSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYC 181
Query: 506 QRXDDPDH 529
++ + +H
Sbjct: 182 RQCEHFNH 189
>SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)
Length = 836
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 611 RVSCWDSXDRCLPTPCPSTKDTHSPHAHPGVWT*P-GRRPSXTTLXXDPPPSAGLXRSTX 787
++ W + + LP + +P + P +WT P P TT DPP + R
Sbjct: 366 QIPLWTAPEPDLPVDSARARSPQAPESDPPMWTAPEPDPPMWTTPELDPPVNNARARYPC 425
Query: 788 HRR 796
+R
Sbjct: 426 EQR 428
>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
Length = 265
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +2
Query: 491 NPQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASGSYXRVSCWDSXDRCLPTP 655
+P G Q D R H+ P SPS P Y++G R D P+P
Sbjct: 149 HPSGSQSGDRQRERRLHKHSSPSISPSPPRRQKYSNGQSDRKGKHRHRDSSSPSP 203
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 453 PRNXQSCSLRLPSTPKAXREXMTQIMFETFXTPRHVRRHPSPCSRCTRPGRTXG 614
PR+ + LP+ K+ RE + + E + R+ + + SR T+PG+ G
Sbjct: 817 PRDDNDYAFPLPTIEKSQREPVEGVYSEPYSDNRNAQIRQNLQSRKTQPGQKNG 870
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +3
Query: 465 QSCSLRLPSTPKAXREXMTQIMFETFXTPRHVRRHPSPCSRCTRPGRTXGYRAGTPGTGV 644
Q L+L S+P A T++ T P R+P P +R P T Y T +
Sbjct: 592 QDTLLQLTSSPHALLPYATRLKSSTNRYPLPTNRYPLPTNRYPLP--TNRYPLPTNRYPI 649
Query: 645 SPHRAHLRRIRTPP 686
+R L + R PP
Sbjct: 650 PTNRYPLPKNRYPP 663
>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1935
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/96 (22%), Positives = 34/96 (35%)
Frame = +2
Query: 494 PQGXQRXDDPDHVRNIXHAPPCTSPSKPVLSLYASGSYXRVSCWDSXDRCLPTPCPSTKD 673
P+G ++ P R PP T+P PV S + ++ W P P +
Sbjct: 1613 PRGHRKSQIPPWTRCQSKKPPWTAPDPPVDSARSPRGQSQIPPWTE-----PDPPVDSAR 1667
Query: 674 THSPHAHPGVWT*PGRRPSXTTLXXDPPPSAGLXRS 781
+PH T P P L P P + ++
Sbjct: 1668 ARNPHGQRQSKTPPWTVPEPDFLLTVPGPDTTVDKA 1703
>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 594 RPGRTXGYRAGTPGTGVSPHRAHLRRIRTPPTPILGSGLSRVA 722
RP T G G P +P R+RTPPTP+ SR A
Sbjct: 209 RPRSTAG-SIGPPPRTSTPRSRTGSRVRTPPTPVSSRAPSRGA 250
>SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 311
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 596 SGSYXRVSCWDSXDRCLPTPCPSTKDTHSPHAHPGVWT*PGRRPSXTTLXXDPPPS 763
SGSY W+ C P +T T+ A+ ++ P P +L DPPPS
Sbjct: 170 SGSYGLQYYWNCDSLCWRAPLYAT--TYPISAYVPYFSPPHAIPRPPSLHRDPPPS 223
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 552 RHVRRHPSPC--SRCTRPGRTXGYRAGTPGTGVSPHRAHLRRIRTPPTPILGSGLSRVAD 725
+ +++HP+P S+ + PG+ R G P T H +R PPT G ++ +
Sbjct: 515 QQMQQHPAPLPTSQPSFPGQQM-QRPGGPPTSQPGGFQHQQRPGAPPTSQPGFPSPQMQE 573
Query: 726 PXRLPS 743
P +LP+
Sbjct: 574 PMQLPT 579
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 645 SPHRAHLRRIRTPPTPILGSGLSRVADPXRLPSXKILPRAPGXXVPLTT 791
SPH L R TPPT + ++DP ++ + K+ P +P + TT
Sbjct: 1573 SPHSVDLTRDGTPPTSPSPEATNPLSDP-KITTFKV-PESPTSSIEATT 1619
>SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)
Length = 340
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 645 SPHRAHLRRIRTPPTPILGSGLSRVADPXRLPSXKILPRAPGXXVPLTT 791
SPH L R TPPT + ++DP ++ + K+ P +P + TT
Sbjct: 3 SPHSVDLTRDGTPPTSPSPEATNPLSDP-KITTFKV-PESPTSSIEATT 49
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 254 GNTARGASSPAKPALHIPEPLSTT 183
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 254 GNTARGASSPAKPALHIPEPLSTT 183
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 671 DTHSPHAHPGVWT*PGRRPSXTTLXXDPPPS 763
+T P A P PG RP T + DPPP+
Sbjct: 26 NTTIPRAPPPNTAIPGDRPPNTPIPGDPPPN 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,710,624
Number of Sequences: 59808
Number of extensions: 683331
Number of successful extensions: 1854
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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