Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C12
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   5.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   5.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +1

Query: 625 GLXGPV-SPHTVPIYEGYALPPRPSWGLDLAGSP 723
           G  GP  SPH  P       PP PS G    G P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 297 PTITPLMAGPSHDRGEHGARSIISCETGLA 208
           P +T +    + D GEH   ++   E GLA
Sbjct: 118 PDVTTVELVDATDPGEHNGDTVTDVEAGLA 147


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 648 GRHRSXESQHDTRXYDPDAYSESTGLDGDVHGGA 547
           G H   +++   + +DP A+S+   L+  ++G A
Sbjct: 342 GDHAPKQTEVRFKVHDPKAHSKGGTLENTINGRA 375


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 648 GRHRSXESQHDTRXYDPDAYSESTGLDGDVHGGA 547
           G H   +++   + +DP A+S+   L+  ++G A
Sbjct: 342 GDHAPKQTEVRFKVHDPKAHSKGGTLENTINGRA 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,955
Number of Sequences: 438
Number of extensions: 6185
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)