Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C10
         (899 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             216   2e-56
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.8  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   8.9  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  216 bits (528), Expect = 2e-56
 Identities = 99/129 (76%), Positives = 115/129 (89%)
 Frame = +1

Query: 130 VYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 309
           V RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSNKKT
Sbjct: 5   VNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKT 64

Query: 310 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAX 489
           R ++P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VTN+ 
Sbjct: 65  RFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVTNSN 124

Query: 490 ARLRSQENE 516
           ARLRS+ENE
Sbjct: 125 ARLRSEENE 133


>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 164 RDLSGINRIAMTNLRGIGVNLEVLTTESAGGS 259
           +DL  I   A T+LR +G+N+E+L+   AGGS
Sbjct: 169 KDLMAIVFFA-TDLREVGINIELLSMLPAGGS 199


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 54  FSCGRVTAWFTVAFLK 101
           FSCG V A+FTVAF K
Sbjct: 581 FSCGSVVAFFTVAFSK 596


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 501 AEASXRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHH 376
           A +S     S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 291 AVSSRGADESETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,473,229
Number of Sequences: 59808
Number of extensions: 322572
Number of successful extensions: 1019
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)