Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C10
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   169   2e-42
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    29   4.5  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  169 bits (412), Expect = 2e-42
 Identities = 75/124 (60%), Positives = 103/124 (83%)
 Frame = +1

Query: 145 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 324
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 325 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAXARLRS 504
           NG++KVLV NVK+L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN  ARLR+
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRT 130

Query: 505 QENE 516
           +E+E
Sbjct: 131 EESE 134


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
 Frame = +1

Query: 133 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 306
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 307 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 480
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 481 NAXARLRSQENE 516
                +   +NE
Sbjct: 121 GKTQFVAPLQNE 132


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
 Frame = +1

Query: 133 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 306
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 307 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 480
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 265 QYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQN 387
           QYLM NI        R   P+GF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,611
Number of Sequences: 27780
Number of extensions: 239829
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)