Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C10
         (899 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo...   188   6e-48
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)           184   5e-47
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)           184   5e-47
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot...    29   5.6  
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ...    28   9.7  

>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
           ribosomal protein L32, human, PIR1:R5HU32
          Length = 133

 Score =  188 bits (457), Expect = 6e-48
 Identities = 86/124 (69%), Positives = 103/124 (83%)
 Frame = +1

Query: 145 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 324
           +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYGS+KKTRH LP
Sbjct: 10  VVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLP 69

Query: 325 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAXARLRS 504
           NGF+K +VHN  ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN  ARLRS
Sbjct: 70  NGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRS 129

Query: 505 QENE 516
           QE+E
Sbjct: 130 QEDE 133


>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  184 bits (449), Expect = 5e-47
 Identities = 83/124 (66%), Positives = 102/124 (82%)
 Frame = +1

Query: 145 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 324
           +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYGS+KKTRH LP
Sbjct: 10  VVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLP 69

Query: 325 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAXARLRS 504
           NGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N   RLRS
Sbjct: 70  NGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRS 129

Query: 505 QENE 516
           QE+E
Sbjct: 130 QEDE 133


>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score =  184 bits (449), Expect = 5e-47
 Identities = 83/124 (66%), Positives = 102/124 (82%)
 Frame = +1

Query: 145 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 324
           +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYGS+KKTRH LP
Sbjct: 10  VVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLP 69

Query: 325 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAXARLRS 504
           NGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N   RLRS
Sbjct: 70  NGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRS 129

Query: 505 QENE 516
           QE+E
Sbjct: 130 QEDE 133


>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
           similar to Anther-specific proline-rich proteins
           SP|P40603 SP|P40602 from {Arabidopsis thaliana};
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 385

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 172 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 327
           +R Q D Y K++R WR   G +   +R  +  YL   I  GSN  +   L N
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSNDYSSIFLTN 194


>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain);
          Length = 211

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 328 GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAXARLRSQ 507
           G +K +V  VK++E+L + NRK   +     S K+   I  + ++    V    A+L   
Sbjct: 90  GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149

Query: 508 E 510
           E
Sbjct: 150 E 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,231,285
Number of Sequences: 28952
Number of extensions: 226087
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)