Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C09
         (776 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1G0S5 Cluster: Hemocyte-specific integrin alpha subuni...    93   9e-18
UniRef50_Q86G86 Cluster: Integrin alpha 3; n=1; Pseudoplusia inc...    87   6e-16
UniRef50_Q11RV4 Cluster: Putative uncharacterized protein; n=1; ...    39   0.12 
UniRef50_Q1LTM0 Cluster: 6-phosphogluconolactonase; n=1; Baumann...    37   0.65 
UniRef50_Q54CU4 Cluster: Colossin A; n=2; Dictyostelium discoide...    35   2.0  
UniRef50_A3J373 Cluster: DTDP-4-dehydrorhamnose reductase; n=2; ...    33   8.0  

>UniRef50_Q1G0S5 Cluster: Hemocyte-specific integrin alpha subunit
           3; n=1; Manduca sexta|Rep: Hemocyte-specific integrin
           alpha subunit 3 - Manduca sexta (Tobacco hawkmoth)
           (Tobacco hornworm)
          Length = 964

 Score = 92.7 bits (220), Expect = 9e-18
 Identities = 43/84 (51%), Positives = 56/84 (66%)
 Frame = +2

Query: 62  RTITDDASKELTIDVNPVANFSISGNQLPNITIHVSRDKLNDGEMILFTHFYKITNYGSS 241
           R ITD+  KEL ID+ P ANF++SG  LPN TI V+R  L + E I F+H Y+  NYG S
Sbjct: 734 RNITDEPVKELVIDIVPQANFTVSGKPLPNGTITVTRPMLYETENITFSHHYETINYGPS 793

Query: 242 NWHVLDADIIIPEKIELIDSLEGC 313
           +W+ L+ DI IPE I L   ++GC
Sbjct: 794 DWYRLEGDIFIPEHINLSSPIKGC 817



 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
 Frame = +1

Query: 334 ECGWSVPAMVSMPVILNLRXNLSKH--GDFYNPT*FNVTT 447
           ECGWS+PA VS+P++L LR +L+++  GD    T FNVTT
Sbjct: 824 ECGWSIPAKVSVPIVLALRFDLAQYVSGDMKENTTFNVTT 863


>UniRef50_Q86G86 Cluster: Integrin alpha 3; n=1; Pseudoplusia
           includens|Rep: Integrin alpha 3 - Pseudoplusia includens
           (Soybean looper)
          Length = 975

 Score = 86.6 bits (205), Expect = 6e-16
 Identities = 40/86 (46%), Positives = 58/86 (67%)
 Frame = +2

Query: 56  LYRTITDDASKELTIDVNPVANFSISGNQLPNITIHVSRDKLNDGEMILFTHFYKITNYG 235
           L R +TD+A KEL ++V P++NFS+SG  +PN+TI VSR+ L  G  I F H+++ITN G
Sbjct: 729 LLRNVTDEAKKELVLEVIPMSNFSVSGKPMPNVTILVSRESLEAGANISFKHYFEITNLG 788

Query: 236 SSNWHVLDADIIIPEKIELIDSLEGC 313
            S+  VL ADII   +  +  ++ GC
Sbjct: 789 PSDAPVLAADIIPRNRTRISANISGC 814



 Score = 35.9 bits (79), Expect = 1.1
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 334 ECGWSVPAMVSMPVILNLRXNLSKHGDFY--NPT*FNVTT 447
           +C W +PA VS PV + L+ +LS  GDF   N T +N TT
Sbjct: 829 KCVWKIPAKVSYPVYVPLQLDLSVEGDFLRENNT-YNATT 867


>UniRef50_Q11RV4 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 288

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 149 NITIHVSRDKLNDGEMILFTHFYKITNYGSSNWHVLDADIIIPEKIELID-SLEGCHSIN 325
           NI   + +D ++  ++     FYKI+N  ++ ++VLD  I++  K      S++G   IN
Sbjct: 128 NIEAWIKKDTIDSSQLNYIQTFYKISNSSNTTFNVLDGIILVKHKASYYKISIDGAAFIN 187

Query: 326 HTW 334
           + W
Sbjct: 188 NRW 190


>UniRef50_Q1LTM0 Cluster: 6-phosphogluconolactonase; n=1; Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)|Rep:
           6-phosphogluconolactonase - Baumannia cicadellinicola
           subsp. Homalodisca coagulata
          Length = 293

 Score = 36.7 bits (81), Expect = 0.65
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = +2

Query: 47  KIYLYRTITDDAS-KELTIDVNPVANFSISGNQLPNITIHVSRDKLNDGEMILFTHFYKI 223
           K +LY  I    S    +ID+N    + +    LPN   H+S D        L+   Y  
Sbjct: 7   KTHLYLGIRPICSIVSYSIDINSGLLYEVDQTSLPNTPTHLSTDLFGKN---LYCASY-- 61

Query: 224 TNYGSSNWHVLDADIIIPEKIELIDSLEGCHSINHTWNADGPYQLWYPC 370
            N    + H ++   I+   +++ID L  CHS N   N      +W PC
Sbjct: 62  -NGSCLSVHKINEQGIVGTLLQIIDGLTNCHSSNVDTN---NLLVWVPC 106


>UniRef50_Q54CU4 Cluster: Colossin A; n=2; Dictyostelium discoideum
             AX4|Rep: Colossin A - Dictyostelium discoideum AX4
          Length = 11103

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
 Frame = +2

Query: 53    YLYRTITDDASKELTIDVNPVANFSISGNQL-PNITIHVSRDKLNDGEMILFTHFYKITN 229
             YL++ ++   S  + + +   +   I+G    P +T  +SR   N G++I+  +F   T 
Sbjct: 9937  YLFQNVSSGPSYVVRLTIPANSTKYIAGTTYSPILTGGMSRATAN-GQVIVLNNFTLDTT 9995

Query: 230   YGSSNWHVL--DADIIIP 277
             YGS+ W  L  DA I+IP
Sbjct: 9996  YGSNTWKNLNNDAGIVIP 10013


>UniRef50_A3J373 Cluster: DTDP-4-dehydrorhamnose reductase; n=2;
           Flavobacteriales|Rep: DTDP-4-dehydrorhamnose reductase -
           Flavobacteria bacterium BAL38
          Length = 315

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +2

Query: 77  DASKELTIDVNPVANFSISGNQLPNITIHVSRDKLNDGEMILFTHFY--KITNYGSSNWH 250
           + +    I+ N   N +I+  +   I IH+S D + D   +    +Y  +      SN  
Sbjct: 81  EPANAFNINANGAENLAITSKKHNTILIHISTDFVFDAYFLDGIAYYDREFRLPLKSNLG 140

Query: 251 VLDADIIIPEKIELIDSLEGCHSINHTW 334
           +L+ D+  P  I  +  L+G  +I  TW
Sbjct: 141 LLETDVPFPSGIYGLTKLQGEQAIQATW 168


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,954,849
Number of Sequences: 1657284
Number of extensions: 12110237
Number of successful extensions: 21888
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21885
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)