Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C09
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   2.3  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   6.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.9  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   9.2  

>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 236 SSNWHVLDADIIIPEKIELIDSLEGCHSINHTWNAD 343
           S NW  LD D    EK+ L     G +  N  WN D
Sbjct: 335 SLNWAKLDDDDAQNEKVRLCCDAAGTNFANCYWNVD 370


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 140 QLPNITIHVSRDKLNDGEMILFTHFYKITNYGSSNWHVLDADIIIPE 280
           +LPN   +++   L+    + F H + ++ Y SS   +  A I IPE
Sbjct: 143 ELPNSFSNLT-SLLSSTFQLCFQHEFTVSKYASSEESIWSAGIAIPE 188


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 71   TDDASKELTIDVNPVANFSISGNQLPNITIHVSRDKLNDGEMILFTHFYKITNYGSSNWH 250
            T+D S + T   +PV+N   S    PNI+     + L+       T   +  N  S++  
Sbjct: 1314 TNDISTQNTFPASPVSNSGFSRQTYPNISQRQGVNMLSHKRKSASTSDRRFVNASSTSGM 1373

Query: 251  VLDADIIIPEKIELIDS 301
             +     I  KI  I +
Sbjct: 1374 NMPISSSISAKISSIQN 1390


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/60 (20%), Positives = 26/60 (43%)
 Frame = +2

Query: 71  TDDASKELTIDVNPVANFSISGNQLPNITIHVSRDKLNDGEMILFTHFYKITNYGSSNWH 250
           T   ++   +  +  A+  +   +LPN  +   RDK+ +    + + +  +  YGS   H
Sbjct: 28  TSTVNESDVLATSTTASSGVKRKRLPNDLVGQLRDKIQENPNDISSWYALVEEYGSKGKH 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,783
Number of Sequences: 5004
Number of extensions: 50626
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)