Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C09
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 116 ANFSISGNQLPNITIHVSRDKLND 187
           A+ S++GN     T+H     LND
Sbjct: 29  ADLSLAGNATKVNTVHEEESSLND 52


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +2

Query: 122 FSISGNQLPNITIHVSRDKLNDGEMILFTHFYKITNYGSSNWHVLD 259
           +SISG     I IH+  D  N   M  F   Y  T   +   H LD
Sbjct: 167 WSISGTVFDLINIHLFHDASNFIAMETFPSVYSKTRRRALE-HTLD 211


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 344  HPHSTCD*CCGSPPANQSAQS 282
            H H+  + C   PPA  S +S
Sbjct: 1743 HEHAMTEGCASPPPAATSMKS 1763


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 344  HPHSTCD*CCGSPPANQSAQS 282
            H H+  + C   PPA  S +S
Sbjct: 1739 HEHAMTEGCASPPPAATSMKS 1759


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,146
Number of Sequences: 438
Number of extensions: 3499
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)