Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_C07
(852 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 31 1.6
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 31 1.6
SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21) 29 3.6
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 3.6
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 29 3.6
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 29 4.8
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22) 29 6.3
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 141 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHI-TWTLPKGRPYFKPTPFP 308
P L+ T+ T A S + P+TT ET TTV T +P+ P + T P
Sbjct: 326 PALETTSAPESTAATESTVAPETTVSQETTVAPETTVPTETTVVPETTPALETTSAP 382
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +2
Query: 161 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGPTLLQAYPFP 307
Y P N PY P Y P N P A Y PP P YP P
Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPP 164
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = -3
Query: 658 PXXEGGGGXPPPXXVFXXWG--PXXPXXXGXPPPXPXG 551
P G GG PPP WG P G PPP G
Sbjct: 505 PPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAG 542
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = -3
Query: 658 PXXEGGGGXPPPXXVFXXWG--PXXPXXXGXPPPXPXG 551
P G GG PPP WG P G PPP G
Sbjct: 538 PPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAG 575
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 558 GXGGGXPFXXGXXGPXXXKTXXGGGXPPPPSXXG 659
G GG P G GP GGG PPP + G
Sbjct: 575 GQGGPPPPGAGQEGPPPPGAGQGGGPPPPGAGQG 608
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/84 (28%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Frame = -3
Query: 799 PPPPX---GXXKKKKKXXXXGXXXXXGXXXGGGGXXXGGXXXXXXKXXXXPXXEGGGGXP 629
PPPP G + G G GGG G P G GG P
Sbjct: 514 PPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQP----PPGAGQGGGP 569
Query: 628 PPXXVFXXWGPXXPXXXGXPPPXP 557
PP GP P PP P
Sbjct: 570 PPPGA-GQGGPPPPGAGQEGPPPP 592
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 141 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHI-TWTLPKGRPYFKPTPFP 308
P L+ T+ T A S + P+TT ET TTV T +P+ P + T P
Sbjct: 2022 PALETTSAPESTAATESTVAPETTVSQETTVAPETTVPTETTVVPETTPALETTSAP 2078
>SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = -3
Query: 226 VSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRKILKLCS 47
VS+ +VV D AVV R +AV+ V Q NH + FY ++S+ K+ L
Sbjct: 473 VSVIIVVIVIAADEVAVVVRLMAVAAVVTLFQLLCRANHAK--FYQMSSFVESKVATLAQ 530
Query: 46 FKS*GF 29
K+ GF
Sbjct: 531 NKAAGF 536
>SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21)
Length = 372
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 212 NPNGNGYEPIDNGAYYVDPPQGPTLLQAYPFPWCS 316
N NG+G P + G V+ P P +L+ P W S
Sbjct: 25 NQNGSGISPEEKGPLMVECPGDPLVLERPPPRWSS 59
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 624 GGGXPPPPSXXGXKXXXFXXXXXPPXXXPPPPXXXP 731
GGG P PP PP PPPP P
Sbjct: 286 GGGAPVPPPPPADGSAPAPPPPPPPGGAPPPPPPPP 321
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 156 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 266
T T TT T+ I TTT T TN +TTV+ T T
Sbjct: 545 TITTNYTTTVTTTITNYTTTFTITITNYTTTVNTTIT 581
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Frame = -3
Query: 658 PXXEGGGGXPPPXXVFXXWG---PXXPXXXGXPPPXPXG 551
P + GG PPP P P G PPP P G
Sbjct: 668 PGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPG 706
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 141 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLP 272
PT ++T TNL +T R +TTT + + +TT T T+P
Sbjct: 188 PTTQQTTTNLPST-RQPTTNQQTTTTLPSTKQPTTTQQTTTTIP 230
>SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22)
Length = 266
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 162 TNLLTTARTSLILPKTTTLMETATNLSTTVHITWTL 269
TN++TT+ T++I T T+ T T ++ T+ IT T+
Sbjct: 168 TNIITTSNTNIITTTTITITITIT-ITITITITITI 202
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,534,312
Number of Sequences: 59808
Number of extensions: 438219
Number of successful extensions: 1705
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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