Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C07
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    31   0.74 
At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein con...    30   2.2  
At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein con...    30   2.2  
At4g23090.1 68417.m03328 hypothetical protein                          30   2.2  
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    29   3.9  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   5.2  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    29   5.2  
At1g02405.1 68414.m00187 proline-rich family protein contains pr...    29   5.2  
At1g72110.1 68414.m08335 expressed protein                             28   6.9  
At1g22900.1 68414.m02860 disease resistance-responsive family pr...    28   6.9  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    28   9.1  
At5g44780.1 68418.m05488 expressed protein low similarity to SP|...    28   9.1  
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i...    28   9.1  
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik...    28   9.1  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -3

Query: 658 PXXEGGGGXPPPXXVFXXWGPXXPXXXGXPPPXP 557
           P   GGG  PPP       GP  P   G PPP P
Sbjct: 672 PPLPGGGPPPPPPP--PGGGPPPPPGGGPPPPPP 703



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +3

Query: 624 GGGXPPPPSXXGXKXXXFXXXXXPPXXXPPPPXXXP 731
           GGG PPPP   G           PP   PPPP   P
Sbjct: 676 GGGPPPPPPPPG------GGPPPPPGGGPPPPPPPP 705


>At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to Myrosinase precursor (Sinigrinase)
           (SP:P37702) [Arabidopsis thaliana]
          Length = 456

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 98  MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN 226
           MK  M+  + LLA+A  +G+ +   +N P+  N  K +N +GN
Sbjct: 1   MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGN 42


>At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to Myrosinase precursor (Sinigrinase)
           (SP:P37702) [Arabidopsis thaliana]
          Length = 541

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 98  MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN 226
           MK  M+  + LLA+A  +G+ +   +N P+  N  K +N +GN
Sbjct: 1   MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGN 42


>At4g23090.1 68417.m03328 hypothetical protein 
          Length = 179

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 328 YFPPRAPGKGVGLK*GRPLGRVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSL 149
           +F P     GV +   RP G +HV  + V   VA++ ++  FG   DV  ++  F  + L
Sbjct: 119 WFQPMLTDVGVAVHSSRPNGILHVSLSGVSPSVAIAYQLFAFG---DVEVLLTLFTIIYL 175

Query: 148 S 146
           +
Sbjct: 176 N 176


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -3

Query: 658 PXXEGGGGXPPPXXVFXXWGPXXPXXXGXP-PPXPXG 551
           P    GG  PPP  +   +GP  P   G P  P P G
Sbjct: 263 PPPHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYG 299


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +3

Query: 636 PPPPSXXGXKXXXFXXXXXPPXXXPPPPXXXPXXXXXP 749
           PPPP         +     PP   PPPP   P     P
Sbjct: 451 PPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPP 488


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 636 PPPPSXXGXKXXXFXXXXXPPXXXPPPPXXXPXXXXXP 749
           PPPPS              PP   PPPP   P     P
Sbjct: 71  PPPPSPPPCPPPPSPPPSPPPPQLPPPPQLPPPAPPKP 108


>At1g02405.1 68414.m00187 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 134

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 636 PPPPSXXGXKXXXFXXXXXPPXXXPPPP 719
           PPPPS    K         PP   PPPP
Sbjct: 64  PPPPSPPPPKKSSCPPSPLPPPPPPPPP 91


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 396 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 301
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At1g22900.1 68414.m02860 disease resistance-responsive family
           protein similar to pathogenesis-related protein [Pisum
           sativum] gi|4585273|gb|AAD25355
          Length = 187

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 240 STTVHITWTLPKGRPYFKPTPFPGARGGK 326
           ST + +T T+ + +PY K TPF G +  K
Sbjct: 15  STVLLLTITVTQSKPYSKTTPFQGNKPDK 43


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +3

Query: 636 PPPPSXXGXKXXXFXXXXXPPXXXPPPPXXXP 731
           PPPP+              PP   PPPP   P
Sbjct: 709 PPPPAPPAPPTPIVHTSSPPPPPPPPPPPAPP 740


>At5g44780.1 68418.m05488 expressed protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 723

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 206 DYNP-NGNGYEPIDNGAYYVDPPQG 277
           +Y+P NG  Y P   G +Y  PPQG
Sbjct: 530 NYSPQNGGHYGPAQFGQWYPGPPQG 554


>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
           identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH4 (SUVH4) GI:13517748
          Length = 624

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 169 RFVAVSLSVGHSQQSEDENHEEF 101
           R VAV ++ G SQ SEDEN  EF
Sbjct: 514 RDVAVPMNNGVSQSSEDENAPEF 536


>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
           protein, putative similar to cold-regulated gene SRC2
           [Glycine max] GI:2055230; contains Pfam profile PF00168:
           C2 domain; identical to cDNA  src2-like protein
           GI:3426059
          Length = 324

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = +2

Query: 197 PPKDYNPNGN--GYEPIDNGAYYVDPPQGP 280
           PP  Y   G   GY P   G Y   PPQGP
Sbjct: 217 PPGAYPQQGGYPGYPPQQQGGYPGYPPQGP 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,501
Number of Sequences: 28952
Number of extensions: 371203
Number of successful extensions: 1219
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)