Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C06
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    30   0.51 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   6.3  

>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -1

Query: 747  EGMEEKAPNGFPERGRKGGTGIPVRRPGSXTRESARGSFQGETPGIXIVLSGFATXDLSV 568
            E +   AP G+     +GG  IP+++PG  T ES    +   +  I +  +GFA+  L +
Sbjct: 845  ENITMSAPLGYVNIAVRGGNIIPLQQPGYTTYESRNNPY---SLLIAMDNNGFASGSLYI 901

Query: 567  D 565
            D
Sbjct: 902  D 902


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 552 EHHKNRRSSXRWRNPTGL*XYQAF----PPGSSLVRSPWXPTLAALPGY 686
           ++HKNR+S+     P GL  Y+A     PPG  + ++     +A L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG--IGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,239
Number of Sequences: 5004
Number of extensions: 52307
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)