Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C06
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    31   1.0  
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    30   2.4  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.5  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.5  
At3g47980.1 68416.m05231 integral membrane HPP family protein co...    29   5.5  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    28   7.3  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.3  

>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
 Frame = -1

Query: 744 GMEEKAPNGFPERGRKGGTGIPVRRPGSXTRESARGSFQGETPGIXIVL---SGFATXDL 574
           G++   P+  P  G  GG G+ V  P      +A  +     P     L   + F     
Sbjct: 85  GVQRSKPSS-PIHGHVGGRGMKVTSPFKTHFGTAATAIPSPLPFSHYTLPYTNPFGFSSY 143

Query: 573 SVDFCDARQGGGAYGKTPATRPXYGSWPFAGLXLTCSFLRYP 448
           S+D+         YG   A  P YGS P  G+    +   YP
Sbjct: 144 SMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYP 185


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 4/103 (3%)
 Frame = -1

Query: 744 GMEEKAPNGFPERGRKGGTGIPVRRPGSXTRESARGSFQGETPGIXIVL---SGFATXDL 574
           G++   P+  P  G  GG G+ V  P      +A  +     P     L   + F     
Sbjct: 85  GVQRSKPSS-PIHGHVGGRGMKVTSPFKTHFGTAATAIPSPLPFSHYTLPYTNPFGFSSY 143

Query: 573 SVDFCDARQGG-GAYGKTPATRPXYGSWPFAGLXLTCSFLRYP 448
           S+D+    Q     YG   A  P YGS P  G+    +   YP
Sbjct: 144 SMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYP 186


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 348  PLPRSLTRCARSFGCGERYQLTQRR 422
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 348  PLPRSLTRCARSFGCGERYQLTQRR 422
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g47980.1 68416.m05231 integral membrane HPP family protein
           contains Pfam domain, PF04982: HPP family
          Length = 252

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 590 KPDRTIXIPGVSP--WKLPRALSLVXDPGRLTGIPVPPFLPLSGKPLGAFSSI 742
           KP++T   P +S   W    A + +   GR+  +  P  + +S  PLGA S+I
Sbjct: 91  KPEKTTVAPSLSDVIWPAAGAFAAMAIMGRIDQMLNPKGISMSVAPLGAVSAI 143


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 540 RPPDEHHKNRRSSXRW 587
           RPPDEH  NR  S  W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 339 PIRKPPLPARWPIH*CRKNLPHL 271
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,397,972
Number of Sequences: 28952
Number of extensions: 308412
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)