Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C05
         (899 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48650.1 68414.m05445 helicase domain-containing protein cont...    29   4.2  
At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa...    28   9.7  
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa...    28   9.7  

>At1g48650.1 68414.m05445 helicase domain-containing protein
           contains similarity to DEIH-box RNA/DNA helicase
           [Arabidopsis thaliana] GI:5881579; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, PF00035:
           Double-stranded RNA binding motif
          Length = 1197

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 150 MTAITRANARRPFILPFDDAFLCEAGGSRVESR 52
           MT +   + R PF++PFD   L E   S+   R
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSKFSGR 842


>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = -2

Query: 634 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 455
           ++  LN+   +   ++ V+E  A    Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 454 VSVFVDFADTSCAAVDFQARVFH 386
           V+  VD    S + + F + + +
Sbjct: 173 VTYVVD-TPRSSSPITFMSNMLY 194


>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = -2

Query: 634 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 455
           ++  LN+   +   ++ V+E  A    Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 454 VSVFVDFADTSCAAVDFQARVFH 386
           V+  VD    S + + F + + +
Sbjct: 173 VTYVVD-TPRSSSPITFMSNMLY 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,487,575
Number of Sequences: 28952
Number of extensions: 313132
Number of successful extensions: 879
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)