Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C04
         (863 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   173   2e-43
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.002
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              40   0.003
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     33   0.30 
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  31   1.6  
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  173 bits (420), Expect = 2e-43
 Identities = 84/102 (82%), Positives = 92/102 (90%)
 Frame = +1

Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
           VDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRKDEQDRCITIKSTAIS+++EL E D  
Sbjct: 27  VDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTAISLYYELPESDFE 86

Query: 379 FITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 504
           +IT P  ++  E+GFLINLIDSPGHVDFSSEVTAALRVTDGA
Sbjct: 87  YITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGA 126



 Score =  129 bits (311), Expect = 3e-30
 Identities = 60/89 (67%), Positives = 69/89 (77%)
 Frame = +2

Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGP 724
           TETVLRQAIAERIKP+LFMNKMDR            YQTF RIVE++NVIIATY+D+ GP
Sbjct: 140 TETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIATYSDEDGP 199

Query: 725 MGEVRVDPSKGSVGFGSGLHGWAFTPQTI 811
           MG ++V P KG+V FGSGLHGWAFT + I
Sbjct: 200 MGNIQVGPEKGTVAFGSGLHGWAFTLKQI 228



 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +3

Query: 135 DEIRGMMDKKRNIRNMSVIAH 197
           D+IRG+MDKK NIRNMSVIAH
Sbjct: 6   DQIRGIMDKKLNIRNMSVIAH 26


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 34.3 bits (75), Expect(2) = 0.002
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = +1

Query: 199  VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 333
            VDHGKSTL D L+   G I+ + +   +  D  + E++R IT+K+
Sbjct: 1950 VDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993



 Score = 25.0 bits (52), Expect(2) = 0.002
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 436  IDSPGHVDFSSEVTAALRVTDG 501
            + + GHVDFS EV+ +L    G
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQG 2012


>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +2

Query: 746 PSKGSVGFGSGLHGWAFTPQTI 811
           P KG+V FGSGLHGWAFT + I
Sbjct: 34  PEKGTVAFGSGLHGWAFTLKQI 55


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = +2

Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 703
           T  VLRQA  E I+P L +NK+DR            +   Q+I+E VN I  T
Sbjct: 118 THVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170



 Score = 35.1 bits (77), Expect = 0.074
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVII 697
           T  VLRQA  E I+P L +NK+DR            +   Q+I+E V+  +
Sbjct: 48  THVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVSTAV 98


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 19/85 (22%), Positives = 42/85 (49%)
 Frame = +2

Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGP 724
           TE +L+ A+ E +   + +NK+DR            Y   + +++ VN +++ +++    
Sbjct: 170 TERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSEGA-- 227

Query: 725 MGEVRVDPSKGSVGFGSGLHGWAFT 799
             ++ + P  G+V F S  + + FT
Sbjct: 228 -DDLVISPLLGNVCFASSSYHFCFT 251


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 28/99 (28%), Positives = 44/99 (44%)
 Frame = +1

Query: 202 DHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVF 381
           D GK+TLT+ L+   G I  A A ++               IK  A S F E+E +  + 
Sbjct: 20  DAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKGATSDFMEIERQRGIS 66

Query: 382 ITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 498
           +        + +   IN++D+PGH DF+ +    L   D
Sbjct: 67  VAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVD 104


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 214 TCRDRPWAITDMLRIFRFLSIIPRISSTREIHHFRWFMIFVL 89
           TCRD+ W++ D++R  R    +   S  R     RW +++++
Sbjct: 215 TCRDQRWSVPDLVRTCRDQRWVSSRSRVRTCRDQRWSVLYLV 256


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 509 PRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 378
           P  P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 239 PTMPPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 780 RPDPKPTEPLLGSTRTSPMGPPSS 709
           +P PK T P+ G+ +  PMGPP S
Sbjct: 641 KPRPKSTPPM-GAVQVLPMGPPPS 663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,254,838
Number of Sequences: 59808
Number of extensions: 549584
Number of successful extensions: 1745
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)