Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_C04
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 171 5e-43
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 168 4e-42
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 79 4e-15
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 79 4e-15
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 59 3e-09
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 56 4e-08
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 56 4e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 50 2e-06
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 44 1e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 33 0.26
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 33 0.26
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 33 0.26
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 31 1.4
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 30 2.4
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 2.4
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 30 2.4
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 5.7
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 5.7
U41007-5|AAK84503.1| 224|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z77663-9|CAB01203.1| 239|Caenorhabditis elegans Hypothetical pr... 28 9.9
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 171 bits (416), Expect = 5e-43
Identities = 89/110 (80%), Positives = 96/110 (87%), Gaps = 8/110 (7%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+RCITIKSTAIS+FFELE+KDL
Sbjct: 28 VDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLE 87
Query: 379 FITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTAALRVTDGA 504
F+ +Q E K EK GFLINLIDSPGHVDFSSEVTAALRVTDGA
Sbjct: 88 FVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGA 137
Score = 135 bits (326), Expect = 4e-32
Identities = 63/85 (74%), Positives = 68/85 (80%)
Frame = +2
Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGP 724
TETVLRQAIAERIKP+LFMNKMDR +QTFQRIVEN+NVIIATY DD GP
Sbjct: 151 TETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIATYGDDDGP 210
Query: 725 MGEVRVDPSKGSVGFGSGLHGWAFT 799
MG + VDPS G+VGFGSGLHGWAFT
Sbjct: 211 MGPIMVDPSIGNVGFGSGLHGWAFT 235
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 132 VDEIRGMMDKKRNIRNMSVIAH 197
VDEIR +MD+KRNIRNMSVIAH
Sbjct: 6 VDEIRALMDRKRNIRNMSVIAH 27
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 168 bits (409), Expect = 4e-42
Identities = 88/110 (80%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+RCITIKSTAIS+FFELE+KDL
Sbjct: 28 VDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLE 87
Query: 379 FITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTAALRVTDGA 504
F+ +Q E K EK GFLINLIDSPGHVDFSSEVTAAL VTDGA
Sbjct: 88 FVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGA 137
Score = 135 bits (326), Expect = 4e-32
Identities = 63/85 (74%), Positives = 68/85 (80%)
Frame = +2
Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGP 724
TETVLRQAIAERIKP+LFMNKMDR +QTFQRIVEN+NVIIATY DD GP
Sbjct: 151 TETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIATYGDDDGP 210
Query: 725 MGEVRVDPSKGSVGFGSGLHGWAFT 799
MG + VDPS G+VGFGSGLHGWAFT
Sbjct: 211 MGPIMVDPSIGNVGFGSGLHGWAFT 235
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 132 VDEIRGMMDKKRNIRNMSVIAH 197
VDEIR +MD+KRNIRNMSVIAH
Sbjct: 6 VDEIRALMDRKRNIRNMSVIAH 27
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 79.0 bits (186), Expect = 4e-15
Identities = 47/100 (47%), Positives = 61/100 (61%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+ E
Sbjct: 29 VDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLCE------- 81
Query: 379 FITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 498
LINLIDSPGHVDFS EVT+AL ++D
Sbjct: 82 -------------PLLINLIDSPGHVDFSGEVTSALILSD 108
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +2
Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY------ 706
TE ++RQ I IL +NK+DR YQ R++E VN I+
Sbjct: 124 TEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCISQVLGGIVL 183
Query: 707 -NDDGGPMGE----VRVDPSKGSVGFGSGLHGWAF 796
+D G + E + DP+KG+V F S LH +AF
Sbjct: 184 EDDTWGNIEESEAKLHFDPAKGNVIFSSALHSYAF 218
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 79.0 bits (186), Expect = 4e-15
Identities = 47/100 (47%), Positives = 61/100 (61%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+ E
Sbjct: 29 VDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLCE------- 81
Query: 379 FITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 498
LINLIDSPGHVDFS EVT+AL ++D
Sbjct: 82 -------------PLLINLIDSPGHVDFSGEVTSALILSD 108
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +2
Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY------ 706
TE ++RQ I IL +NK+DR YQ R++E VN I+
Sbjct: 124 TEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCISQVLGGIVL 183
Query: 707 -NDDGGPMGE----VRVDPSKGSVGFGSGLHGWAF 796
+D G + E + DP+KG+V F S LH +AF
Sbjct: 184 EDDTWGNIEESEAKLHFDPAKGNVIFSSALHSYAF 218
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/101 (36%), Positives = 55/101 (54%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 51 VDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL---------- 97
Query: 379 FITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 501
+G+L+NLID+PGHVDFS+EV+ +L V DG
Sbjct: 98 ----------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDG 128
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 55.6 bits (128), Expect = 4e-08
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = +1
Query: 205 HGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVF 381
HGK+T D L+ + A + RFTD E+ R +IKS +S
Sbjct: 143 HGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQPVS------------ 190
Query: 382 ITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 501
I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG
Sbjct: 191 IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADG 227
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/85 (29%), Positives = 43/85 (50%)
Frame = +2
Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGP 724
TE +R AI ER+ L ++K+DR Y + I++ VN I++T+ ++ P
Sbjct: 242 TERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTFAEEDVP 301
Query: 725 MGEVRVDPSKGSVGFGSGLHGWAFT 799
+ + P G+V F SG + F+
Sbjct: 302 V----LSPLNGNVIFSSGRYNVCFS 322
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 55.6 bits (128), Expect = 4e-08
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = +1
Query: 205 HGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVF 381
HGK+T D L+ + A + RFTD E+ R +IKS +S
Sbjct: 18 HGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQPVS------------ 65
Query: 382 ITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 501
I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG
Sbjct: 66 IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADG 102
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/85 (29%), Positives = 43/85 (50%)
Frame = +2
Query: 545 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGP 724
TE +R AI ER+ L ++K+DR Y + I++ VN I++T+ ++ P
Sbjct: 117 TERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTFAEEDVP 176
Query: 725 MGEVRVDPSKGSVGFGSGLHGWAFT 799
+ + P G+V F SG + F+
Sbjct: 177 V----LSPLNGNVIFSSGRYNVCFS 197
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 50.0 bits (114), Expect = 2e-06
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKD 372
VD GK+T+T+ L+ AG I AG TD E++R IT++S A+++ +
Sbjct: 34 VDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVNLDW------ 87
Query: 373 LVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 501
KG INLID+PGHVDF EV +RV DG
Sbjct: 88 --------------KGHRINLIDTPGHVDFRVEVERCVRVLDG 116
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +1
Query: 418 GFLINLIDSPGHVDFSSEVTAALRVTDGA 504
G IN+ID+PGHVDF+ EV ALRV DGA
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGA 139
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.1 bits (72), Expect = 0.26
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VDHGK+TLT ++ GA+ + D +E+ R ITI A + +E ++
Sbjct: 58 VDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYETAKRHYA 115
Query: 379 FITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 501
I P + ++ N+I ++ + V AA TDG
Sbjct: 116 HIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDG 148
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.1 bits (72), Expect = 0.26
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VDHGK+TLT ++ GA+ + D +E+ R ITI A + +E ++
Sbjct: 59 VDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYETAKRHYA 116
Query: 379 FITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 501
I P + ++ N+I ++ + V AA TDG
Sbjct: 117 HIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDG 149
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.1 bits (72), Expect = 0.26
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VDHGK+TLT ++ GA+ + D +E+ R ITI A + +E ++
Sbjct: 59 VDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYETAKRHYA 116
Query: 379 FITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 501
I P + ++ N+I ++ + V AA TDG
Sbjct: 117 HIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDG 149
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 209 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQ 388
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+ S +
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSISPSEASAVMRTGVH 328
Query: 389 TLTS 400
T TS
Sbjct: 329 TSTS 332
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 386 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 210
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 209 P 207
P
Sbjct: 102 P 102
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 440 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 315
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 386 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 210
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 209 P 207
P
Sbjct: 102 P 102
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 29.1 bits (62), Expect = 4.3
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VD GKSTL L+ ++ ++R D K E R + E EE+
Sbjct: 179 VDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAWVLDETEEERER 232
Query: 379 FITNPDQREKSEKGFL-INLIDSPGHVDFSSEVTAALRVTDGA 504
+T R E I L+D+PGH DF S + D A
Sbjct: 233 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAA 275
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 29.1 bits (62), Expect = 4.3
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +1
Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
VD GKSTL L+ ++ ++R D K E R + E EE+
Sbjct: 197 VDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAWVLDETEEERER 250
Query: 379 FITNPDQREKSEKGFL-INLIDSPGHVDFSSEVTAALRVTDGA 504
+T R E I L+D+PGH DF S + D A
Sbjct: 251 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAA 293
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +2
Query: 140 DPWDDGQEAEYPQHVCDRPRSITASQPSRTRWF----PRPVSLLVREPERPV-SLTRVRT 304
D + +G+E H+ RP++ S P R P L +R E+PV S T +
Sbjct: 15 DEFKNGEEPSSSGHIFGRPQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSS 74
Query: 305 NKTVASPLNLRPSLCSS 355
+ S + PSL SS
Sbjct: 75 SSRPMSAVFNTPSLSSS 91
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +2
Query: 140 DPWDDGQEAEYPQHVCDRPRSITASQPSRTRWF----PRPVSLLVREPERPV-SLTRVRT 304
D + +G+E H+ RP++ S P R P L +R E+PV S T +
Sbjct: 15 DEFKNGEEPSSSGHIFGRPQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSS 74
Query: 305 NKTVASPLNLRPSLCSS 355
+ S + PSL SS
Sbjct: 75 SSRPMSAVFNTPSLSSS 91
>U41007-5|AAK84503.1| 224|Caenorhabditis elegans Hypothetical
protein C33H5.19 protein.
Length = 224
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 160 RSGISATCL*SPTVDHGKSTLTDSLVSKAGIIAGARAGE---TRFTDTRKDEQDRCITIK 330
R GI L S +D GK+ T + AG+ G G F+D DE+ + +K
Sbjct: 160 RVGIKHPVLTSQQLDSGKARFTTNAARAAGLTVGCLLGMFPLLFFSDDEDDEKKKKKELK 219
Query: 331 STAI 342
+T +
Sbjct: 220 ATKL 223
>Z77663-9|CAB01203.1| 239|Caenorhabditis elegans Hypothetical
protein F53F4.10 protein.
Length = 239
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 181 CL*SPTVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS--MFF 354
C +P + G T+T+++ K GI AG + FT + C+ I+ F
Sbjct: 124 CATTPCMLRGAETITETIEKKLGIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFE 183
Query: 355 ELEEKDL 375
+L KD+
Sbjct: 184 DLTPKDV 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,050,899
Number of Sequences: 27780
Number of extensions: 402111
Number of successful extensions: 1275
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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