Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C04
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.22 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.22 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.52 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.90 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   1.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.6  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   2.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   2.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   8.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   8.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
 Frame = +2

Query: 116 MVNFTGRRDPWDDGQEAEYPQHVCDRPRS--ITASQPSRTRWFPRPVSLLVREPERPVSL 289
           +VN+  R D   D  E +YP    ++  S  + + Q          +  LVR+PE  +S+
Sbjct: 324 LVNYASRSDMHSDNIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAMKPLVRQPEDTMSV 383

Query: 290 TRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQTLTSVKRV 412
            R++  +    P   R   C  S   K    S+ +  + R+
Sbjct: 384 DRMQHCELHMQP---RKKNCCRSWLSKFPTRSKRIDVISRI 421


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
 Frame = +2

Query: 116 MVNFTGRRDPWDDGQEAEYPQHVCDRPRS--ITASQPSRTRWFPRPVSLLVREPERPVSL 289
           +VN+  R D   D  E +YP    ++  S  + + Q          +  LVR+PE  +S+
Sbjct: 324 LVNYASRSDMHSDNIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAMKPLVRQPEDTMSV 383

Query: 290 TRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQTLTSVKRV 412
            R++  +    P   R   C  S   K    S+ +  + R+
Sbjct: 384 DRMQHCELHMQP---RKKNCCRSWLSKFPTRSKRIDVISRI 421


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 859 KLDQGSILNLSAYISENCLRGESPPMKTRPETNRAL 752
           +LD   + +L   +SEN   G S    T+PET++ +
Sbjct: 525 QLDSTELADLDISLSENLSSGLSISDSTKPETSKGI 560


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 28/102 (27%), Positives = 45/102 (44%)
 Frame = +1

Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
           VD GKST T  L+ K G I   R  E +F +    E  +  + K   +    + E +  +
Sbjct: 16  VDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKYAWVLDKLKAERERGI 71

Query: 379 FITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 504
            I     + ++ K + + +ID+PGH DF   +       D A
Sbjct: 72  TIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCA 112


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 28/102 (27%), Positives = 45/102 (44%)
 Frame = +1

Query: 199 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLV 378
           VD GKST T  L+ K G I   R  E +F +    E  +  + K   +    + E +  +
Sbjct: 16  VDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKYAWVLDKLKAERERGI 71

Query: 379 FITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 504
            I     + ++ K + + +ID+PGH DF   +       D A
Sbjct: 72  TIDIALWKFETAK-YYVTIIDAPGHRDFIKNMITGTSQADCA 112


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 412 EKGFLINLIDSPGHVDFSSEVTAALRVTD 498
           E G  +  +D+PGH  F S       +TD
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITD 218



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 199 VDHGKSTLTDSL 234
           VDHGK+TL D+L
Sbjct: 154 VDHGKTTLLDAL 165


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 421 FLINLIDSPGHVDFSSEVTAALRVTDGA 504
           + + +ID+PGH DF   +       D A
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQADCA 39


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 421 FLINLIDSPGHVDFSSEVTAALRVTDGA 504
           + + +ID+PGH DF   +       D A
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQADCA 55


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 340 ISMFFELEEKDLVFITNPDQREKSEKGFLI 429
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 769 RVWSSWVGFHPSNNSLRCML 828
           ++ S+  G+HPS+ S R ML
Sbjct: 565 KLGSALGGWHPSDRSARLML 584


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 340 ISMFFELEEKDLVFITNPDQREKSEKGFLI 429
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,153
Number of Sequences: 438
Number of extensions: 5265
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)