Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_C02
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.039
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.052
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.052
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 32 0.091
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.039
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +1
Query: 706 PXXPXPXXPPRXKAXXXFGPPLPXXLPHXNPXAPXXPPAPXXTPXXPPPNP 858
P P P PP PPLP P P P AP P P P P
Sbjct: 429 PSLP-PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +1
Query: 706 PXXPXPXXPPRXKAXXXFGPPLPXXLPHXNPXAPXXPPAPXXTPXXPPPNP 858
P P PP G P LP P AP P P PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.052
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +1
Query: 694 GXXFPXXPXPXXP--PRXKAXXXFGPPLPXXLPHXNPXAPXXPPAPXXTPXXPPP 852
G P P P P+ A P P P P P PP P P PPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.052
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 857 GLGGGXXGVXXGAGGXXGAXGFXWGRXXGRGGP 759
G GGG G G GG G G G G GGP
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.3 bits (70), Expect = 0.091
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -3
Query: 851 GGGXXGVXXGAGGXXGAXGFXWGRXXGRGG 762
GGG G G GG GA G G GRGG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 31.1 bits (67), Expect = 0.21
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -3
Query: 857 GLGGGXXGVXXGA-GGXXGAXGFXWGRXXGRGGPXXXXAFXRGG 729
G GGG G G GG G G G GRGG +GG
Sbjct: 27 GFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 30.7 bits (66), Expect = 0.28
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -3
Query: 857 GLGGGXXGVXXGAGGXXGAXG-FXWGRXXGRGGPXXXXAFXRGGWXG 720
G GG G G GG G G F GR RGG RGG G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 818 GGXXGAXGFXWGRXXGRGGPXXXXAFXRGGWXGXGKXGK 702
GG G+ G G GRGG RGG G + G+
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGR 47
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Frame = +1
Query: 706 PXXPXPXXPPRXKAXXXFGPPLPXXLPHXNPXAPXXP-PAPXXTPXXPPP 852
P P P P PP P P AP P AP PPP
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Frame = +1
Query: 781 LPHXNPXAPXXPPA--PXXTPXXPPP 852
LP NP P PP P P PPP
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Frame = +1
Query: 706 PXXPXPXXPPRXKAXXXFGPPLPXXLPHXNPXAPXX----PPAPXXTPXXPPPNP 858
P P P P PP+P +P P P PP P + P P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVP--VPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Frame = +1
Query: 706 PXXPXPXXPPRXKAXXXFGP-PLPXXLPHXNPXAPXXPPAPXXTPXXPP-PNP 858
P P PP K P P P P + PP P T PP P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,280
Number of Sequences: 5004
Number of extensions: 45444
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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