Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B24
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983...    34   0.17 
01_06_0513 - 29944888-29945943                                         33   0.39 
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816...    31   1.6  

>03_05_0717 +
           27097367-27097621,27097744-27097866,27098136-27098303,
           27098393-27100072
          Length = 741

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 95  LLFFIATVLVCVNAE-VYRSSDYEKEYPIRGLFSKRHPRDVTWDTRMGGGKVF 250
           ++  I  VL CV    +Y  +  E+ YPI+G +S+     +T+D R+   K+F
Sbjct: 461 VVMLILVVLTCVGTHYIYGGNGAEEPYPIKGKYSQFTLLTMTYDARLWNLKMF 513


>01_06_0513 - 29944888-29945943
          Length = 351

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 108 SPQSWCV*TQKYT-GLLIMKKNTPSEAYFQSDTPVTSRGTREWEEGRSSALWD 263
           SP+S    T +Y  G     +  P+ A   +  P  +RGT EW EG + AL D
Sbjct: 57  SPRSKRRRTDRYAQGFEFAPRPAPATATATAPAPTPARGTPEWSEGSTFALLD 109


>05_03_0076 +
           8164466-8164511,8164643-8164698,8165529-8165867,
           8165938-8166012,8166674-8166846,8168697-8168795,
           8169002-8169161,8169321-8169464,8169551-8169723,
           8169796-8169991,8170061-8170258,8170864-8171016,
           8171838-8171959,8172037-8172136,8172221-8172316,
           8172400-8172530,8173717-8173819,8174373-8174555,
           8174632-8174724,8174818-8174853,8175672-8175773,
           8176310-8176472,8176557-8176678,8176994-8177158,
           8177667-8177849,8178679-8178831,8179136-8179288,
           8179373-8179444,8179530-8179664,8179739-8179800,
           8179999-8180096,8180628-8180737,8180832-8181005,
           8181092-8181157,8181847-8181915,8181989-8182099,
           8182418-8182558,8182638-8182766,8182864-8183029,
           8183174-8183388,8184883-8185089,8185501-8185572,
           8185897-8186010,8186090-8186281,8186489-8186569,
           8186654-8186728,8186812-8186878,8187292-8187452,
           8187943-8188116,8188209-8188337,8188421-8188504,
           8188589-8188650,8188728-8188800,8189008-8189142,
           8189790-8189960,8190054-8190319,8190440-8190458
          Length = 2448

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 89  SKLLFFIATVLVCVNAEVYRSSDYEKEYPIRGLFSKRHPRDVTWDTRMGGGKVFGTLGQN 268
           SK    +AT+   + +  Y  S Y +  P+ GL  K    ++ W TR+   KV G +G  
Sbjct: 737 SKREVAVATLGQVIQSTGYVISPYNEYPPLLGLLLKLLNGELEWSTRLEVLKVLGIMGAL 796

Query: 269 D 271
           D
Sbjct: 797 D 797


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,333,776
Number of Sequences: 37544
Number of extensions: 436720
Number of successful extensions: 836
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)