Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B24
         (869 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.043
SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      31   1.6  
SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             30   2.1  
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)          29   4.9  
SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)          28   8.6  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   8.6  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 32/110 (29%), Positives = 43/110 (39%)
 Frame = +2

Query: 224 TRMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRL 403
           T+ G G  FGT      GLFG AG N        G +TG  +G         ST +GG  
Sbjct: 47  TQTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFG 103

Query: 404 DWANKNAQAXIDINRQIGXRSGMTASGSGVWDLDKNTHISXGGMVSKGFG 553
             A  N           G     T +G+G++   +    + GG  + GFG
Sbjct: 104 STAGTNTGGLFGNTAASG-----TTTGTGLFGQTQGA--AFGGTSTSGFG 146


>SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 684

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 539 RPYRRXRCGCSYQDPTHRSRRLSSQICXRFVCLCQXQLVRSCWPSPDVHRS*CCHL 372
           RP++   CG SY  P  R R +      R  C    +L    +PS D+ R   CHL
Sbjct: 309 RPFKCDICGMSYSTPGKRKRHMKDHDVNRHECAECGKLF--SYPS-DLKRHAACHL 361


>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 177 SEAYFQSDTPVTSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMT 323
           S+    ++TP+ +     WEEG +S  +DRT  +++   +T+E  S+ T
Sbjct: 5   SDYIADANTPLRAGNESFWEEGNTSFKFDRTREEFN-SSITSEESSIET 52


>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 104 FIATVLVCVNAEVYRSSDYEKEYPIRGLFSK 196
           F   + VC+ A V   +DY+KE   RGL SK
Sbjct: 145 FAILIAVCIVALVTAVNDYQKEQQFRGLQSK 175


>SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)
          Length = 445

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 308 SLCCNRLYRIVHRRSVPKCRRPSLLPFSCPT*RH 207
           S+ CNR+   V+ R    CR P+L     PT +H
Sbjct: 390 SMSCNRVLYFVYSRLTKGCREPALRVRDKPTCKH 423


>SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +3

Query: 132 TQKYTGLLIMKKNTPSEAYFQSDTP---VTSRGTREWEEGRSS 251
           TQ+   +   KK+   +AYF+S TP    + R    W+E  +S
Sbjct: 187 TQQNASISEQKKSKKKDAYFRSQTPDYFKSDRANNSWDEPEAS 229


>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
          Length = 495

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 13/152 (8%)
 Frame = +2

Query: 221 DTRMGGGKVFGTL---------GQNDDGLFGKAGYNREIFND-DRGQLTGQAYGTR-VLG 367
           DT  GGG+   T          G+++    G+AG+ R    D DRG+       TR VL 
Sbjct: 278 DTGRGGGRATETTEGTAPHVREGEDEVHTAGEAGFRRRYPADFDRGRAKEDVEDTRGVLY 337

Query: 368 PGGDSTNYGGRLDWANKNAQAXIDINRQIGXRSGMT--ASGSGVWDLDKNTHISXGGMVS 541
             G  TN GG  +W N      + I R        T  A     W    N       +  
Sbjct: 338 WLG--TN-GGLTEWKNPGEAGLVTITRSSYGHGKATDAADRRPSWCSTSNKPNQWWKI-- 392

Query: 542 KGFGXKKPNVGLQXXIRHXW*LSTQSLHHXIM 637
             FG K+  V     +RH W  +  +L H ++
Sbjct: 393 -DFGDKRTVVANGYRLRHGWSGNAGALRHWVL 423


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +3

Query: 105 SSPQSWCV*TQKYTGLLIMKKNTPSEAYFQSDTPVTSRGTREWEEGRSSALWDRTTMD 278
           ++P S  + T K + L     +TPS +     TP+ S+ +  W+  R+  L +R+  +
Sbjct: 193 ATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPSTTWKVFRTKVLLERSVKE 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,657,177
Number of Sequences: 59808
Number of extensions: 513945
Number of successful extensions: 1133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)