Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B23
(943 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 31 1.0
SB_58757| Best HMM Match : GRP (HMM E-Value=0.0041) 31 1.4
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 5.5
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 28 9.5
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 31.5 bits (68), Expect = 1.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 263 PXXXPXXPXXXPPXPPWXPXPPFP 334
P P P PP PP P PPFP
Sbjct: 466 PPPPPPPPPPPPPPPPPPPPPPFP 489
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 263 PXXXPXXPXXXPPXPPWXPXPP 328
P P P PP PP+ P PP
Sbjct: 472 PPPPPPPPPPPPPPPPFPPPPP 493
>SB_58757| Best HMM Match : GRP (HMM E-Value=0.0041)
Length = 154
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGG G G G + G G GG GG+ G GGG
Sbjct: 68 GGGGGGGGGGGGGGGGDDGDGGGGDGGGGGGGGDGGGGGGG 108
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGG G G G + G G GG GG G GGG
Sbjct: 71 GGGGGGGGGGGGGDDGDGGGGDGGGGGGGGDGGGGGGGGGG 111
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.1 bits (67), Expect = 1.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 275 PXXPXXXPPXPPWXPXPPFP 334
P P PP PP+ P PP+P
Sbjct: 90 PNPPYPPPPYPPYPPPPPYP 109
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 233 PPXXLWXXXDPXXXPXXPXXXPPXPPWXPXPPFP 334
PP P P P PP PP P PP P
Sbjct: 1256 PPGMRPMPPQPPFMPPPPRMQPPGPPGPPGPPGP 1289
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 233 PPXXLWXXXDPXXXPXXPXXXPPXPPWXPXPPFP 334
PP P P P PP PP P PP P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPP 401
Score = 29.1 bits (62), Expect = 5.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 233 PPXXLWXXXDPXXXPXXPXXXPPXPPWXPXPPFPXL 340
PP P P P PP PP P PP P L
Sbjct: 399 PPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPAL 434
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 233 PPXXLWXXXDPXXXPXXPXXXPPXPPWXPXPPFP 334
PP P P P PP PP P PP P
Sbjct: 379 PPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPP 412
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 233 PPXXLWXXXDPXXXPXXPXXXPPXPPWXPXPPFP 334
PP P P P PP PP P PP P
Sbjct: 383 PPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPP 416
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 233 PPXXLWXXXDPXXXPXXPXXXPPXPPWXPXPPFP 334
PP P P P PP PP P PP P
Sbjct: 385 PPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 233 PPXXLWXXXDPXXXPXXPXXXPPXPPWXPXPPFP 334
PP P P P PP PP P PP P
Sbjct: 390 PPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPP 423
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGGE G G G R G G GG RG G G
Sbjct: 156 GGGEGGWGGRGGNGGGRGGGEGGGGRGRGTGGGSRGGGGDG 196
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -3
Query: 938 GGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GG G G G E G G GG GG G GGG
Sbjct: 1775 GGGGGMGGGGMAAGGGEFGGGEGMGGGGMAGGGGGMGGGG 1814
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 881 GRXGXGGEKXXGGERGXXGGG 819
GR G GG GG RG GGG
Sbjct: 198 GRGGYGGRGRGGGGRGGYGGG 218
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 263 PXXXPXXPXXXPPXPPWXPXPPFP 334
P P P PP PP P PP P
Sbjct: 1307 PPESPPPPPPPPPPPPPPPLPPTP 1330
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,037,166
Number of Sequences: 59808
Number of extensions: 85348
Number of successful extensions: 1463
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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