Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B23
(943 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 31 1.2
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 1.2
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.6
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.6
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 31 1.6
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 30 2.1
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 30 2.1
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.1
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 30 2.1
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.1
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.1
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 4.8
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 4.8
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 4.8
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 29 4.8
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 29 4.8
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 28 8.4
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 28 8.4
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 938 GGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GG G G+ G R GR G GG GG RG GGG
Sbjct: 83 GGNGGFGDNGGLR-GGNGGGRGGNGGFDDNGGGRGGNGGG 121
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 211 PPPPXFXSTXFXXVXXGPXXXSXXPPXXXPXPPLXSXPPLP 333
PPPP V P S PP P PP+ S P P
Sbjct: 770 PPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPP 810
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 211 PPPPXFXSTXFXXVXXGPXXXSXXPPXXXPXPPLXSXPPLP 333
PPPP V P S PP P PP+ S P P
Sbjct: 770 PPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPP 810
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGG G G G ++ + G GG+ GG+ G GGG
Sbjct: 158 GGGRGGSGGQGGWGGSQDGGSQGGWGGQN-GGGQGGNQGGG 197
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 938 GGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GG G G G R + G G GG++ GG+RG GG
Sbjct: 262 GGGGGFGGGGRDRFN-DRSGGGGYGGDRDRGGDRGGDRGG 300
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGG G G G R R GG++ G RG GGG
Sbjct: 171 GGGSSGGGRFGGGGGDR-FNDRGSRGGDRYGGDRRGGGGGG 210
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGG G G G G GG GG RG GGG
Sbjct: 77 GGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGG 117
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/41 (43%), Positives = 18/41 (43%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGG G G G R G G GG GG RG GGG
Sbjct: 91 GGGRGGGGGGGGGR----GGGGGGRGGGGGGGGGRGGGGGG 127
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 941 GGGEXGX-GEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
G G G G G R R GR G GG + GG+RG GGG
Sbjct: 157 GRGRGGDRGGRGSDRGGRGGFGRGGGGGFR--GGDRGGFGGG 196
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GG G G G R R G GG GG+RG G G
Sbjct: 682 GGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDRGRGGYG 722
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GG G G G R R G GG GG+RG G G
Sbjct: 723 GGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDRGRGGYG 763
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 938 GGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GG G G+ G + G+ G GG+ GG + GGG
Sbjct: 242 GGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGG 281
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GG G G G R R G GG GG+RG G G
Sbjct: 682 GGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDRGRGGYG 722
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 938 GGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GG G G+ G + G+ G GG+ GG + GGG
Sbjct: 204 GGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGG 243
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 938 GGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GG G G+ G + G+ G GG+ GG + GGG
Sbjct: 242 GGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGG 281
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGG G G R G G GG GG+RG GGG
Sbjct: 11 GGGGFRGGRGGDRGGSRGGFGGGGRGG--YGGGDRGSFGGG 49
>Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical
protein F41E7.5 protein.
Length = 112
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGG 822
G G+ G G G GR G GG GG G GG
Sbjct: 40 GPGQFGRGGFGGGPGSNYGPGRGGFGGNGGFGGNGGFGGG 79
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKR-EXXGRXGXGGEKXX----GGERGXXGGG 819
GG G G G R GR GGE+ GGERG GGG
Sbjct: 139 GGAPRGGGRGGSRRGGGGRGGGRTNSGGEETARDTDGGERGGRGGG 184
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGG 822
GGG G G G G G GG GG G GG
Sbjct: 802 GGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGG 841
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 211 PPPPXFXSTXFXXVXXGPXXXSXXPP-XXXPXPPLXSXPPLP 333
PPPP T + GP S PP P PP S P P
Sbjct: 442 PPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNP 483
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGG G G G G GG GG G GGG
Sbjct: 138 GGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGGG 178
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 926 GXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
G GE EK+E G GG GG RG GG
Sbjct: 245 GDGEEKEDEEKKEGGEGGGRGGRGGRGGFRGGFRGG 280
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 926 GXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
G GE EK+E G GG GG RG GG
Sbjct: 245 GDGEEKEDEEKKEGGEGGGRGGRGGRGGFRGGFRGG 280
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 881 GRXGXGGEKXXGGERGXXGG 822
GR G GG + GG RG GG
Sbjct: 102 GRGGRGGHRGGGGNRGGRGG 121
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -3
Query: 941 GGGEXGXGEXGXXREKREXXGRXGXGGEKXXGGERGXXGGG 819
GGG G G G G G G GG +G GGG
Sbjct: 54 GGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGGNQGGGGGG 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,327,667
Number of Sequences: 27780
Number of extensions: 89672
Number of successful extensions: 1322
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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