Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B22
(859 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 32 0.42
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 32 0.42
At2g26860.2 68415.m03223 F-box family protein contains F-box dom... 32 0.56
At2g26860.1 68415.m03222 F-box family protein contains F-box dom... 32 0.56
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 32 0.56
At1g69390.1 68414.m07966 chloroplast division protein, putative ... 30 2.3
At1g57790.1 68414.m06557 F-box family protein contains Pfam PF00... 29 5.2
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 28 6.9
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 28 6.9
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +3
Query: 141 ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 308
+L + NQ E EKL+ NS L+ Y ++ S ++E+Q K + QNV ++DK R
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343
>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 434
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +3
Query: 141 ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 308
+L + NQ E EKL+ NS L+ Y ++ S ++E+Q K + QNV ++DK R
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344
>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
Pfam:PF00646
Length = 355
Score = 31.9 bits (69), Expect = 0.56
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 611 LIFKYWLYLVLWILKYTLLFSHQGNELPTDEF 516
++ K W +L LW+ K T + +H ++LP +F
Sbjct: 29 ILSKRWEFLWLWVPKLTFVMNHYESDLPIQDF 60
>At2g26860.1 68415.m03222 F-box family protein contains F-box domain
Pfam:PF00646
Length = 405
Score = 31.9 bits (69), Expect = 0.56
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 611 LIFKYWLYLVLWILKYTLLFSHQGNELPTDEF 516
++ K W +L LW+ K T + +H ++LP +F
Sbjct: 29 ILSKRWEFLWLWVPKLTFVMNHYESDLPIQDF 60
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 31.9 bits (69), Expect = 0.56
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 288 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 386
+++D + EY KL + +G + KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418
>At1g69390.1 68414.m07966 chloroplast division protein, putative
(MinE1) identical to chloroplast division protein
homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
Length = 229
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 114 MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 215
+LA + G ELS + Q++E LYN+I G +D
Sbjct: 70 VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103
>At1g57790.1 68414.m06557 F-box family protein contains Pfam
PF00646: F-box domain
Length = 352
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 788 GFTIVPXSQGXVELAIVDEEPGR-XFRTWRAGRTI 687
GF+ P S V I D +PG RTW G+T+
Sbjct: 137 GFSSAPTSSECVVFTIKDYDPGHVTIRTWSPGQTM 171
>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 390
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 180 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 296
K+ + IL+G D A EY Q K IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141
>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 497
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 180 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 296
K+ + IL+G D A EY Q K IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,369
Number of Sequences: 28952
Number of extensions: 328681
Number of successful extensions: 858
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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