Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B21
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   1.4  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        27   2.5  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   2.5  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.5  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    26   7.5  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 356 EESFQRTLVPHRWQWMSPRVGHG*DSKGVGGPKESLH 246
           EES +R LV  R     P+VG G  S   GGP +S++
Sbjct: 564 EESMRRWLVRLRQACCHPQVGFGNKSAFGGGPMKSIN 600


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +3

Query: 318 PSMWNQRSLKTFLQ--RRNSKLLLKRLCQ*RVTMKATEKRPSLNWRSLSPIEASKNFWIV 491
           P  W  + + + L   R+NS++     C  + T++  +K    NW  ++ +E       +
Sbjct: 274 PPSWKTQQMMSHLNLSRKNSEVSKTCKCLQKETIRCNKKSNCYNWNGIAALETYTTECHI 333

Query: 492 SDRKKEVLLDAGA 530
               KE  +  G+
Sbjct: 334 QIPDKEATITVGS 346


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 585 PVIGVYIEPRCSEPASDTKLDQCRLWMRPHWSVKPR 692
           P IG  I+P+ +E  S  ++  C  W +    +KPR
Sbjct: 351 PTIGYNIKPKHAEGYSSNEITHCWFWPKFSEFLKPR 386


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = +3

Query: 402 RVTMKATEKRPSLNWRSLSPIEASKNFWIVSDRKKEVLLDAGALGDVPAVYXVPQPALHX 581
           +  + ++ + PS+   S  P  +SK       RK      A A+  +P  +   QP +  
Sbjct: 386 QAALSSSLETPSVLTSSYKPSSSSKVSAKSVSRKPT---GAPAIPKLPPKHPSRQPTVRA 442

Query: 582 MPVIGVYIEPRCSEPASDTKL 644
            P  G  IEP   EP+   +L
Sbjct: 443 TPSTGKQIEPPNDEPSIGNEL 463


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 300 SRGHPLPSMWNQRSLKTFLQRRNSKLLLKR 389
           +R H L S  NQ+    FL+  NSKL+ +R
Sbjct: 33  ARIHQLISQRNQKFQANFLEWENSKLVYRR 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,107
Number of Sequences: 5004
Number of extensions: 65964
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)