Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B21
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0356 - 2814175-2815401                                           29   4.5  
11_06_0703 + 26444128-26446215,26446525-26447226                       28   7.9  
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100...    28   7.9  

>01_01_0356 - 2814175-2815401
          Length = 408

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 270 NAFGILPVPDSRGHPLPSMWNQRSLKTFLQRRNSKLLLKRL 392
           + FG LPVP S   PL S  +  S++    RR   +LL RL
Sbjct: 74  STFGFLPVPSSPLRPLASSGSSNSVQPLAARRG--VLLMRL 112


>11_06_0703 + 26444128-26446215,26446525-26447226
          Length = 929

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 266 LQRLWNLTRARLAGTSTAIDVEPAFVENFPPAQEFXVAPKALVSVTSDYESDGEEAFPE 442
           L  L NL R ++   +    + P F+  FP ++E    PK    + +D  +  E AF E
Sbjct: 694 LVMLPNLERLKIVKATAITKIGPEFIGQFPRSREAVAFPKLEWLIINDMPNWEEWAFIE 752


>08_01_0125 +
           1001397-1001865,1002743-1002810,1003359-1003490,
           1003649-1003810,1003973-1004260
          Length = 372

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 299 LAGTSTAIDVEPAFVENFPPAQEFXVAPKALVSVTSDYESDGEEAFPELEVPE 457
           LA T  A+ +      +    Q   VAP+    VTS Y  D   A P   +P+
Sbjct: 304 LAQTPPAVPISSTDTHSSEQGQHSSVAPRTTNIVTSAYNPDQSWASPAQSIPD 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,133,815
Number of Sequences: 37544
Number of extensions: 489333
Number of successful extensions: 1187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)