Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B21
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)                      33   0.28 
SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1)                   29   6.1  
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)                  29   6.1  

>SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)
          Length = 472

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 516 LDAGALGDVPAVYXVPQPALHXMPVIGVYI 605
           + A A  D+P  Y +P+ A H +PV+G ++
Sbjct: 153 VQADAKTDIPTTYQIPRLAAHELPVVGTFV 182


>SB_38618| Best HMM Match : PhdYeFM (HMM E-Value=3.1)
          Length = 370

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 291 VPDSRGHPLPSMWNQRSL---KTFLQRRNSKLLLKRLCQ*RVTMKATEKRPS 437
           +P+   HPLPS   QR +   +   +RR  K  LKRL      +KA  K  S
Sbjct: 3   IPNVARHPLPSCKKQRDILRKQKAKRRRRIKQCLKRLRPINARIKALRKSSS 54


>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 259

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 541 CPPFTKCLSQRSIXC-RLLGCTS 606
           CPP TKC + R   C RL  CT+
Sbjct: 5   CPPLTKCTNYRKRRCPRLTKCTN 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,487,590
Number of Sequences: 59808
Number of extensions: 521733
Number of successful extensions: 1312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)