Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B21
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.1  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 278 WNLTRARLAGTSTAIDVEPAFVENFPPAQEFXVAPKALVSVTSDYESDGEEAFPELEV-P 454
           W LT  +L  TS+   VEP     +       VA    +S   +YE    + FP  E  P
Sbjct: 76  WLLTEEKLPKTSSNASVEPDSKVTYSGLWRVCVA----ISSRMEYECSRIDYFPNEEYSP 131

Query: 455 EPN 463
           +P+
Sbjct: 132 DPS 134


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 355 RKVFNERWFHIDGSGCPRESGTGK 284
           R+   E W H+D S  P +S + +
Sbjct: 61  RRKLEENWIHVDISFLPEKSTSSR 84


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 740 PRPIDCRVKALPXNQVSWL 684
           P    C V+  P   VSWL
Sbjct: 324 PATFTCNVRGNPIKTVSWL 342


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 605 RTPLFRTGFRYKVRPMQA-LDAPPLVSEAKILGSE 706
           R   FRTGF +K +P    L+A  L  +  + GS+
Sbjct: 164 RVDPFRTGFEHKRQPTSIDLNAVRLCFQVFLEGSQ 198


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 605 RTPLFRTGFRYKVRPMQA-LDAPPLVSEAKILGSE 706
           R   FRTGF +K +P    L+A  L  +  + GS+
Sbjct: 164 RVDPFRTGFEHKRQPTSIDLNAVRLCFQVFLEGSQ 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,854
Number of Sequences: 438
Number of extensions: 4896
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)