Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B21
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06930.2 68416.m00823 protein arginine N-methyltransferase fa...    30   2.2  
At3g06930.1 68416.m00822 protein arginine N-methyltransferase fa...    30   2.2  
At1g13780.1 68414.m01617 F-box family protein contains F-box dom...    29   3.8  
At1g03380.1 68414.m00317 expressed protein                             28   6.6  

>At3g06930.2 68416.m00823 protein arginine N-methyltransferase
           family protein similar to protein arginine
           methyltransferase [Mus musculus] GI:5257221
          Length = 535

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 117 FYCIVDSWSPLFERSVQTGAVLKFYHTKLSKGRCSLTQPWK 239
           F C+ D  S   E+S   G  +KF + K SK  C   + W+
Sbjct: 74  FICVSDGSSSSEEKSFSKGVNIKFKNEKDSKDFCESFEEWR 114


>At3g06930.1 68416.m00822 protein arginine N-methyltransferase
           family protein similar to protein arginine
           methyltransferase [Mus musculus] GI:5257221
          Length = 534

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 117 FYCIVDSWSPLFERSVQTGAVLKFYHTKLSKGRCSLTQPWK 239
           F C+ D  S   E+S   G  +KF + K SK  C   + W+
Sbjct: 74  FICVSDGSSSSEEKSFSKGVNIKFKNEKDSKDFCESFEEWR 114


>At1g13780.1 68414.m01617 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 451

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 281 NLTRARLAGTSTAIDVEPAFVENFPPAQEFXVAPKALVSVTSDYE 415
           NL+R   A  S+ +   PAF+E+FP  +   +  +  V V   +E
Sbjct: 327 NLSRVEAAFPSSLLQFLPAFLESFPNLKHLILETECPVEVMEKFE 371


>At1g03380.1 68414.m00317 expressed protein
          Length = 926

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 729 RLQSQGFTSEPSILASLTSGGAS 661
           RL  Q FTS PS+  S +SGG+S
Sbjct: 272 RLSPQTFTSSPSLSPSSSSGGSS 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,231,869
Number of Sequences: 28952
Number of extensions: 371718
Number of successful extensions: 995
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)