Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_B19
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.80
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 31 1.1
SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 28 7.4
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 28 7.4
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.9 bits (69), Expect = 0.60
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +3
Query: 630 PXPXKIFLSPPXPXGGXXXXXFXPPGGXFXKXXXXPPXXXPPXXTXXPPP 779
P P S P P GG PPGG P PP PPP
Sbjct: 935 PPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPP 984
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
PP P GG P PPG P PP PPP
Sbjct: 945 PP--PPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPP 984
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Frame = +3
Query: 657 PPXPXGGXXXXXFXPPGGXFXKXXXXP----PXXXPPXXTXXPPP 779
PP P GG PPGG P P PP PPP
Sbjct: 922 PPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPP 966
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 657 PPXPXGGXXXXXFXPPGGXFXKXXXXPPXXXPPXXTXXPP 776
PP P GG PPGG P PP PP
Sbjct: 933 PPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPP 972
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
PP P G PG P PP PP P PPP
Sbjct: 955 PPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPP--PPPPPP 994
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXP----PXXXPPXXPXXPPP 780
P +P GG P PPG P P PP PPP
Sbjct: 910 PSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPP 955
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 631 PXPXKFFCPPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
P P PP P G P PP PP PP P PP
Sbjct: 241 PPPPHSMPPPGMPPPGMMPPPGFPPMGMPGMGGMPPPGMPPPMPPGGMPP 290
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
PP P P PP + PP PP P PPP
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPP 411
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
PP P P PP PP PP P PPP
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPP 412
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 631 PXPXKFFCPPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
P P PP P P PP PP PP P PPP
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
PP P P PP PP PP P PPP
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPP 406
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
PP P P PP PP PP P PPP
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPP 409
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 631 PXPXKFFCPPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
P P PP P P PP PP PP P PPP
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
PP P P PP PP PP P PPP
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410
>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXPP-XXXPPXXPXXPPP 780
PP P G PG PP P PP P PPP
Sbjct: 208 PPNAPPGLMPPPGMLPPPGGMPPGRMPPQGLPFPPPGPIPPPP 250
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +1
Query: 655 PPXTPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
PP P P PP A + PP PP P PPP
Sbjct: 154 PPYPPPLYPPPPNPPPPNAPY----PPPPYPPPPNPPYPPPP 191
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Frame = +1
Query: 631 PXPXKFFCPPXTPXGGKXX---PGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
P P + PP P P PP PP PP P PPP
Sbjct: 155 PYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPP 207
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Frame = +3
Query: 519 PXPXNRKGPGWNPRPXKTPXPXXXXFXSXKXXFFX--KXPXPXKIFL---SPPXPXGGXX 683
P P N P P P P P S + P P ++ +PP P
Sbjct: 117 PPPPNAPYPP-PPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYP 175
Query: 684 XXXFXPPGGXFXKXXXXPPXXXPPXXTXXPPP 779
+ PP PP PP PPP
Sbjct: 176 PPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPP 207
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Frame = +1
Query: 631 PXPXKFFCPPXTPXGGKXXPG-------XXPPGAXFXXXXXXPPXXXPPXXPXXPP 777
P P F PP P G PG PPG PP P P PP
Sbjct: 72 PGPPGFQGPPGNPAGAIGPPGLPGPNGVNGPPGELGDMGPPGPPGPPGPQMPPGPP 127
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 664 TPXGGKXXPGXXPPGAXFXXXXXXPPXXXPPXXPXXPPP 780
TP G P PPG PP P PPP
Sbjct: 655 TPEAGPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPP 693
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,618,009
Number of Sequences: 59808
Number of extensions: 278018
Number of successful extensions: 940
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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