Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_B18
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    76   8e-15
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    29   0.66 
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    29   1.2  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    27   4.7  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   4.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   6.2  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   6.2  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 75.8 bits (178), Expect = 8e-15
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
 Frame = +3

Query: 105 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 284
           S L   +  +   Y   T   LK IDA+L ++ +   +QFGY  LVGT+PFNSFLSGFIS
Sbjct: 5   SGLFLPLSSVITSYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFIS 64

Query: 285 TVSCFVLGVCLRLQVNPE------NKNEFQGLSA-ERGFADFIFAHLVLH 413
            V  FV+ V  R+ +  +      +K +   +S  +R F +F F+ LVLH
Sbjct: 65  CVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPYKRAFLEFCFSSLVLH 114


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 401  MCKYEICK-ATFSTQPLELILVFWINL*PKTHSKNKAAY 288
            +CK  IC+  +   Q L+ ++ +WIN  P TH ++ A Y
Sbjct: 980  ICK--ICRFCSQRVQDLDKVVTYWINTLPVTHDEDDAPY 1016


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
 Frame = -3

Query: 340 FSGLTCSRRHTPRTKQLTVDIKP-------LKKELNGKVPTRQ---Q*PNCMTAVRKI*K 191
           F G+T  RRH    K    DI P       L KE+N      Q   + P+   ++R   +
Sbjct: 36  FEGVTLQRRHVKGMKSYGSDITPRRPKQLGLPKEVNTSECIDQGSWRKPSAFESLRSYSR 95

Query: 190 RYASIILSFLGV 155
           +++  I SF+GV
Sbjct: 96  KFSKRIFSFIGV 107


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 136 YNFGITAVSEDILL*FYLFCNSK*YTSSQLSQILRIPYS 20
           Y  G T  S+      Y+F  SK YTS Q+ ++L +P S
Sbjct: 170 YELGYTECSKS-----YVFRGSKDYTSKQIQEMLGLPTS 203


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 91  ITIKCLHLLL*FQNCIKNTQRK-LLRSLK*LMHT 189
           + IKC+  L+  + C+KN + K L+  LK L+ T
Sbjct: 143 VLIKCIEQLIQIKVCMKNEKMKNLMEQLKPLLQT 176


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 126 PKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVG 245
           PK+       T   L  +D YL+YI ++ +    Y   +G
Sbjct: 557 PKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCLG 596


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 90  NHNKMSSLTAVIPK--LYQEYTTKTPKKLKIID 182
           N +   +LT   PK  LY  Y++++PK  KI+D
Sbjct: 139 NLDSSLNLTVASPKSNLYYRYSSESPKYAKILD 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,786
Number of Sequences: 5004
Number of extensions: 61902
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)